Evidence map›Paper›PMID 32559248›Full record

ArticlePloS one2020

Detection of hepatitis B virus pre-S mutants in plasma by a next-generation sequencing-based platform determines their patterns in liver tissues.

Chiao-Fang Teng, Hung-Wen Tsai, Tsai-Chung Li, Ting Wang, John Wang, Woei-Cherng Shyu, Han-Chieh Wu, Ih-Jen Su, Long-Bin Jeng

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Chiao-Fang TengGraduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan.
Hung-Wen TsaiDepartment of Pathology, National Cheng Kung University Hospital, Tainan, Taiwan.
Tsai-Chung LiDepartment of Public Health, College of Public Health, China Medical University, Taichung, Taiwan.
Ting WangOrgan Transplantation Center, China Medical University Hospital, Taichung, Taiwan.
John WangDepartment of Pathology, China Medical University Hospital, Taichung, Taiwan.
Woei-Cherng ShyuGraduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan.
Han-Chieh WuNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Zhunan, Taiwan.
Ih-Jen SuDepartment of Biotechnology, Southern Taiwan University of Science and Technology, Tainan, Taiwan.
Long-Bin JengOrgan Transplantation Center, China Medical University Hospital, Taichung, Taiwan.ORCID 0000-0002-4588-2268

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is among the leading causes of cancer-related death worldwide. Patients with hepatitis B virus (HBV) pre-S mutants in liver tissues or blood have been regarded as a high-risk population for HCC development and recurrence. Detection of pre-S mutants in clinical specimens is thus important for early diagnosis and prognosis of HCC to improve patient survival. Recently, we have developed a next-generation sequencing (NGS)-based platform that can quantitatively detect pre-S mutants in patient plasma with superior sensitivity and accuracy. In this study, we compared the pre-S genotyping results from plasma by the NGS-based analysis with those from liver tissues by the immunohistochemistry (IHC)-based analysis in 30 HBV-related HCC patients. We demonstrated that the detection rate of pre-S mutants was significantly higher by NGS- than by IHC-based analysis. There was a moderate to good agreement between both analyses in detection of pre-S mutants. Compared with the IHC, the NGS-based detection of pre-S mutants in patient plasma could determine the patterns of pre-S mutants in liver tissues more efficiently in a noninvasive manner. Our data suggest that the NGS-based platform may represent a promising approach for detection of pre-S mutants as biomarkers of HBV-related HCC in clinical practice.

Indexed as

AdultAgedCarcinoma, HepatocellularDNA, ViralFemaleGenotypeHepatitis B, ChronicHepatitis B Surface AntigensHepatitis B virusHigh-Throughput Nucleotide SequencingHumansImmunohistochemistryLiverLiver NeoplasmsMaleMiddle AgedDNA, ViralHepatitis B Surface AntigensProtein Precursors

Identifiers

PMID32559248
PMCPMC7304603

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.