Evidence map›Paper›PMID 32558906›Full record

ArticleThe Journal of cell biology2020

UBR E3 ligases and the PDIA3 protease control degradation of unfolded antibody heavy chain by ERAD.

Danming Tang, Wendy Sandoval, Cynthia Lam, Benjamin Haley, Peter Liu, Di Xue, Deepankar Roy, Tom Patapoff, Salina Louie, Brad Snedecor and 1 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of cell biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Danming TangCell Culture and Bioprocess Operations Department, Genentech Inc., South San Francisco, CA.
Wendy SandovalDepartment of Microchemistry, Proteomics and Lipidomics, Genentech Inc., South San Francisco, CA.
Cynthia LamCell Culture and Bioprocess Operations Department, Genentech Inc., South San Francisco, CA.
Benjamin HaleyDepartment of Molecular Biology, Genentech Inc., South San Francisco, CA.
Peter LiuDepartment of Microchemistry, Proteomics and Lipidomics, Genentech Inc., South San Francisco, CA.
Di XueDepartment of Research Biology, Genentech Inc., South San Francisco, CA.
Deepankar RoyCell Culture and Bioprocess Operations Department, Genentech Inc., South San Francisco, CA.
Tom PatapoffDepartment of Early Stage Pharmaceutical Development, Genentech Inc., South San Francisco, CA.
Salina LouieCell Culture and Bioprocess Operations Department, Genentech Inc., South San Francisco, CA.
Brad SnedecorCell Culture and Bioprocess Operations Department, Genentech Inc., South San Francisco, CA.
Shahram MisaghiCell Culture and Bioprocess Operations Department, Genentech Inc., South San Francisco, CA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accumulation of unfolded antibody chains in the ER triggers ER stress that may lead to reduced productivity in therapeutic antibody manufacturing processes. We identified UBR4 and UBR5 as ubiquitin E3 ligases involved in HC ER-associated degradation. Knockdown of UBR4 and UBR5 resulted in intracellular accumulation, enhanced secretion, and reduced ubiquitination of HC. In concert with these E3 ligases, PDIA3 was shown to cleave ubiquitinated HC molecules to accelerate HC dislocation. Interestingly, UBR5, and to a lesser degree UBR4, were down-regulated as cellular demand for antibody expression increased in CHO cells during the production phase, or in plasma B cells. Reducing UBR4/UBR5 expression before the production phase increased antibody productivity in CHO cells, possibly by redirecting antibody molecules from degradation to secretion. Altogether we have characterized a novel proteolysis/proteasome-dependent pathway involved in degradation of unfolded antibody HC. Proteins characterized in this pathway may be novel targets for CHO cell engineering.

Indexed as

Amino Acid SequenceAnimalsB-LymphocytesCalmodulin-Binding ProteinsCHO CellsCloning, MolecularCricetulusEndoplasmic Reticulum-Associated DegradationGene ExpressionGenetic VectorsHumansImmunoglobulin Heavy ChainsMiceMice, Inbred C57BLModels, MolecularProtein BiosynthesisCalmodulin-Binding ProteinsImmunoglobulin Heavy ChainsPDIA3 protein, humanProtein Disulfide-IsomerasesRecombinant ProteinsUbiquitin-Protein LigasesUBR4 protein, humanUBR5 protein, human

Identifiers

PMID32558906
PMCPMC7337499
OpenAlexW3036102301

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.