Evidence map›Paper›PMID 32558886›Full record

ArticleNucleic acids research2020

Transposon-mediated telomere destabilization: a driver of genome evolution in the blast fungus.

Mostafa Rahnama, Olga Novikova, John H Starnes, Shouan Zhang, Li Chen, Mark L Farman

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
  5. Article
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  7. Article
  8. Article
  9. Pyricularia oryzae: Lab star and field scourge.Molecular plant pathology · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The Impact of Blast Disease: Past, Present, and Future.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Mostafa RahnamaDepartment of Plant Pathology, University of Kentucky, 1405 Veteran's Dr., Lexington, KY 40546, USA.
Olga NovikovaDepartment of Plant Pathology, University of Kentucky, 1405 Veteran's Dr., Lexington, KY 40546, USA.
John H StarnesDepartment of Plant Pathology, University of Kentucky, 1405 Veteran's Dr., Lexington, KY 40546, USA.
Shouan ZhangDepartment of Plant Pathology, University of Kentucky, 1405 Veteran's Dr., Lexington, KY 40546, USA.
Li ChenDepartment of Plant Pathology, University of Kentucky, 1405 Veteran's Dr., Lexington, KY 40546, USA.
Mark L FarmanDepartment of Plant Pathology, University of Kentucky, 1405 Veteran's Dr., Lexington, KY 40546, USA.
University of Kentucky · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The fungus Magnaporthe oryzae causes devastating diseases of crops, including rice and wheat, and in various grasses. Strains from ryegrasses have highly unstable chromosome ends that undergo frequent rearrangements, and this has been associated with the presence of retrotransposons (Magnaporthe oryzae Telomeric Retrotransposons-MoTeRs) inserted in the telomeres. The objective of the present study was to determine the mechanisms by which MoTeRs promote telomere instability. Targeted cloning, mapping, and sequencing of parental and novel telomeric restriction fragments (TRFs), along with MinION sequencing of genomic DNA allowed us to document the precise molecular alterations underlying 109 newly-formed TRFs. These included truncations of subterminal rDNA sequences; acquisition of MoTeR insertions by 'plain' telomeres; insertion of the MAGGY retrotransposons into MoTeR arrays; MoTeR-independent expansion and contraction of subtelomeric tandem repeats; and a variety of rearrangements initiated through breaks in interstitial telomere tracts that are generated during MoTeR integration. Overall, we estimate that alterations occurred in approximately sixty percent of chromosomes (one in three telomeres) analyzed. Most importantly, we describe an entirely new mechanism by which transposons can promote genomic alterations at exceptionally high frequencies, and in a manner that can promote genome evolution while minimizing collateral damage to overall chromosome architecture and function.

Indexed as

Evolution, MolecularMagnaporthePlant DiseasesRetroelementsTelomereRetroelements

Identifiers

PMID32558886
PMCPMC7367193
OpenAlexW3035926183

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.