Evidence map›Paper›PMID 32557903›Full record

ArticleMolecular ecology2020

Ecological divergence in sympatry causes gene misexpression in hybrids.

Joseph A McGirr, Christopher H Martin

Open access · greenAbstract read
In one paragraph

Article in Molecular ecology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

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  10. Proteomic analysis of FCurrent zoology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Joseph A McGirrDepartment of Biology, University of North Carolina, Chapel Hill, NC.ORCID 0000-0003-3942-4372
Christopher H MartinDepartment of Biology, University of North Carolina, Chapel Hill, NC.ORCID 0000-0001-7989-9124
University of North Carolina at Chapel Hill · US

Funding

Discovery and functional analysis of novel candidate genes and variants underlying craniofacial diversification in Cyprinodon pupfishesR01DE027052 · NIDCR · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Christopher Herbert Martin · 2018 to 2026
$3.0M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NIDCR NIH HHS R01 DE027052NIH HHS S10 OD018174
6 · The paper itself

Abstract

Ecological speciation occurs when reproductive isolation evolves as a byproduct of adaptive divergence between populations. Selection favouring gene regulatory divergence between species could result in transgressive levels of gene expression in F1 hybrids that may lower hybrid fitness. We combined 58 resequenced genomes with 124 transcriptomes to identify patterns of hybrid gene misexpression that may be driven by adaptive regulatory divergence within a young radiation of Cyprinodon pupfishes, which consists of a dietary generalist and two trophic specialists-a molluscivore and a scale-eater. We found more differential gene expression between closely related sympatric specialists than between allopatric generalist populations separated by 1,000 km. Intriguingly, 9.6% of genes that were differentially expressed between sympatric species were also misexpressed in F1 hybrids. A subset of these genes were in highly differentiated genomic regions and enriched for functions important for trophic specialization, including head, muscle and brain development. These regions also included genes that showed evidence of hard selective sweeps and were significantly associated with oral jaw length-the most rapidly diversifying skeletal trait in this radiation. Our results indicate that divergent ecological selection in sympatry can contribute to hybrid gene misexpression which may act as a reproductive barrier between nascent species.

Indexed as

Genetic FitnessHybridization, GeneticKillifishesSympatryAnimalsGene ExpressionGenetic SpeciationGenomeReproductive Isolationallele-specific expressionDobzhansky-Muller incompatibilityecological speciationgene misexpressiongene misregulationRNAseq

Identifiers

PMID32557903
PMCPMC8209238
OpenAlexW3036116139

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.