Evidence map›Paper›PMID 32557200›Full record

ArticleJournal of applied genetics2020

De novo transcriptome of the whole-body of the gastropod mollusk Philomycus bilineatus, a pest with medical potential in China.

Zhongjie Li, Yaping Yuan, Miaomiao Meng, Ping Hu, Yong Wang

Abstract read
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In one paragraph

Article in Journal of applied genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Frontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Zhongjie LiMedical College, Henan University of Science and Technology, Luoyang, 471000, People's Republic of China. sui_feng5217@126.com.ORCID http://orcid.org/0000-0002-2753-9212
Yaping YuanMedical College, Henan University of Science and Technology, Luoyang, 471000, People's Republic of China.
Miaomiao MengMedical College, Henan University of Science and Technology, Luoyang, 471000, People's Republic of China.
Ping HuMedical College, Henan University of Science and Technology, Luoyang, 471000, People's Republic of China.
Yong WangMedical College, Henan University of Science and Technology, Luoyang, 471000, People's Republic of China.
Henan University of Science and Technology · CN

Funding

National Natural Science Foundation of China 81703475
6 · The paper itself

Abstract

Philomycus bilineatus is a highly common gastropod mollusk pest in China and is also utilized to treat infectious diseases. However, no genomic resources are available for this non-model species. In the present study, the transcriptomic analysis of P. bilineatus was completed. After sequencing using the next generation sequencing technology, 9.11 Gb of clean reads were obtained, which led to the assembly and annotation of 145,523 transcripts and 125,690 unigenes. Unigenes were functionally classified using Gene Ontology (GO), euKaryotic Ortholog Groups of proteins (KOG), and Kyoto Encyclopedia of Genes and Genomes (KEGG). A total of 27,554 unigenes were assigned into 55 GO terms, 13,989 unigenes were differentiated into 26 KOG categories, and 16,368 unigenes were assigned to 229 KEGG pathways. Furthermore, 16,614 simple sequence repeats (SSRs), 38 olfactory genes, and 40 antimicrobial peptide/protein genes were identified. The transcriptome profile of P. bilineatus will provide a valuable genomic resource for further study, will promote the development of new pest management strategies through interference of chemosensory communication, and will support potential medicinal uses of this species.

Indexed as

TranscriptomeAmino Acid SequenceAnimalsChinaGastropodaGene LibraryGene OntologyHigh-Throughput Nucleotide SequencingMicrosatellite RepeatsMolecular Sequence AnnotationSequence Analysis, DNAAntimicrobial peptide/protein genesPhilomycus bilineatusRNA sequencing, olfactory genesTranscriptome

Identifiers

PMID32557200
OpenAlexW3036474004

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.