Evidence map›Paper›PMID 32557076›Full record

ArticleEnvironmental science and pollution research international2020

Degradation of BTEX mixture by a new Pseudomonas putida strain: role of the quorum sensing in the modulation of the upper BTEX oxidative pathway.

Ilaria Chicca, Simone Becarelli, Christopher Dartiahl, Salvatore La China, Teresa De Kievit, Giulio Petroni, Simona Di Gregorio, David B Levin

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Article in Environmental science and pollution research international, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Ilaria ChiccaDepartment of Biology, University of Pisa, Pisa, Italy.
Simone BecarelliDepartment of Biology, University of Pisa, Pisa, Italy.
Christopher DartiahlDepartment of Biosystems Engineering, University of Manitoba, Winnipeg, Manitoba, Canada.
Salvatore La ChinaDepartment of Life Sciences, University of Modena and Reggio-Emilia, Modena, Italy.
Teresa De KievitDepartment of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.
Giulio PetroniDepartment of Biology, University of Pisa, Pisa, Italy.
Simona Di GregorioDepartment of Biology, University of Pisa, Pisa, Italy. simona.digregorio@unipi.it.ORCID http://orcid.org/0000-0002-4068-6946
David B LevinDepartment of Biosystems Engineering, University of Manitoba, Winnipeg, Manitoba, Canada.
University of Pisa · ITUniversity of Manitoba · CAUniversity of Modena and Reggio Emilia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A new Pseudomonas putida strain (AQ8) was isolated from a decommissioned oil refinery's soil in Italy and characterized for its ability to degrade BTEX. The draft genome of the new strain was sequenced and annotated for genes that encode enzymes putatively involved in BTEX degradation and quorum sensing. The strain was transformed with a plasmid expressing lactonase, which cleaves the autoinducer quorum sensing signal molecule, the acyl-homoserine lactone, to obtain a quorum sensing minus strain. P. putida AQ8 depleted the 40% on average of all the components of the initial BTEX concentration in 36 h. The quorum sensing minus strain, in the same time interval, depleted only the 10% of the initial BTEX concentration. The role of quorum sensing in regulating the expression of the annotated benzene/toluene dioxygenase gene (benzA) and biphenyl/toluene/benzene dioxygenase (bphA) genes, which are involved in BTEX degradation, was studied by quantitative RT-real-time quantitative (q)PCR analysis. The qPCR data showed decreased levels of expression of the benzA and bphA genes in the quorum sensing minus strain. Our results showed, for the first time, quorum sensing modulation of the level of transcription of dioxygenase genes in the upper BTEX oxidation pathway.

Indexed as

Pseudomonas putidaBenzeneItalyOxidative StressQuorum SensingBenzeneAcyl-homoserine lactonebenzABiodegradationbphABTEXPseudomonas putidaQuorum sensing

Identifiers

PMID32557076
OpenAlexW3036545465

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.