Evidence map›Paper›PMID 32556905›Full record

ArticleTropical animal health and production2020

Variation in the KRTAP6-3 gene and its association with wool characteristics in Pakistani sheep breeds and breed-crosses.

Farman Ullah, Syed M Jamal, Huitong Zhou, Jon G H Hickford

Abstract read
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In one paragraph

Article in Tropical animal health and production, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Identification of the Keratin-Associated Protein 22-2 Gene in theAnimals : an open access journal from MDPI · 2023
    Article
  3. Genetic variation in the ovineArchives animal breeding · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Farman UllahDepartment of Biotechnology, University of Malakand, Chakdara, Dir (L), 18800, Khyber Pakhtunkhwa, Pakistan.
Syed M JamalDepartment of Biotechnology, University of Malakand, Chakdara, Dir (L), 18800, Khyber Pakhtunkhwa, Pakistan. jamal115@yahoo.com.ORCID http://orcid.org/0000-0002-0768-4471
Huitong ZhouGene-Marker Laboratory, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, 7647, New Zealand.
Jon G H HickfordGene-Marker Laboratory, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, 7647, New Zealand.
Lincoln University · NZUniversity of Malakand · PK

Funding

Higher Education Commision, Pakistan 20-3370/NRPU/R&D/HEC 2014/455
6 · The paper itself

Abstract

This study investigated variation in the keratin-associated proteins gene, KRTAP6-3, in 5 Pakistani sheep breeds/crosses using polymerase chain reaction-single strand confirmation polymorphism (PCR-SSCP) analysis. Different banding patterns were revealed, including previously described patterns and a novel pattern (named variant H). The amplified PCR product of the novel banding pattern was directly sequenced, and a synonymous nucleotide variation c.51T>C was revealed. Among the wool traits assessed, a strong correlation (r = 0.929; P < 0.001) was observed between fibre diameter standard deviation (FDSD) and coefficient of variation of fibre diameter (CVFD), between FDSD and medullation (r = 0.720; P < 0.001), between FDSD and medullation standard deviation (MeSD) (r = 0.734; P < 0.001), between MeSD and coefficient of variance of medullation (CVMed), (r = 0.903, P < 0.001), and between CVFD and medullation (r = 0.660), CVFD and MeSD (r = 0.786; P < 0.001), CVFD and CVMed (r = 0.701; P < 0.001) and medullation and MeSD (r = 0.771; P < 0.001). Variant B was found to be associated (P = 0.018) with CVFD; the presence of B being associated with a higher CVFD, than in its absence (41.08 ± 3.98 versus 36.34 ± 3.08). Variant C was associated with CVMed (P = 0.040), where sheep with C had a lower CVMed than sheep where it was absent. Variation in KRTAP6-3 was found to affect fibre diameter related traits of wool.

Indexed as

AnimalsBreedingFemaleKeratinsMalePakistanSheep, DomesticSpecies SpecificityWoolKeratinsKeratin-associated proteinKRTAP6-3 genePakistani sheep breedsVariant HWool characteristics

Identifiers

PMID32556905
OpenAlexW3036866823

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.