Evidence map›Paper›PMID 32556244›Full record

ReviewJournal of experimental botany2020

Tidying-up the plant nuclear space: domains, functions, and dynamics.

Ana Paula Santos, Valérie Gaudin, Iva Mozgová, Frédéric Pontvianne, Daniel Schubert, Ahmet L Tek, Martina Dvořáčková, Chang Liu, Paul Fransz, Stefanie Rosa and 1 more

Erratum issuedAbstract readReview
In one paragraph

Review in Journal of experimental botany, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Climate change and plant genomic plasticity.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Modeling the 3D genome of plants.Nucleus (Austin, Tex.) · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Ana Paula SantosInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.
Valérie GaudinInstitut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France.
Iva MozgováBiology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic.
Frédéric PontvianneCNRS, Laboratoire Génome et Développement des Plantes (LGDP), Université de Perpignan Via Domitia, Perpignan, France.
Daniel SchubertInstitute for Biology, Freie Universität Berlin, Berlin, Germany.
Ahmet L TekAgricultural Genetic Engineering Department, Niğde Ömer Halisdemir University, Niğde, Turkey.
Martina DvořáčkováCEITEC/Masaryk University, Brno, Czech Republic.
Chang LiuCenter for Plant Molecular Biology (ZMBP), University of Tübingen, Tübingen, Germany.
Paul FranszUniversity of Amsterdam, Amsterdam, The Netherlands.
Stefanie RosaSwedish University of Agricultural Sciences, Uppsala, Sweden.
Sara FarronaPlant and AgriBiosciences Centre, Ryan Institute, NUI Galway, Galway, Ireland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding how the packaging of chromatin in the nucleus is regulated and organized to guide complex cellular and developmental programmes, as well as responses to environmental cues is a major question in biology. Technological advances have allowed remarkable progress within this field over the last years. However, we still know very little about how the 3D genome organization within the cell nucleus contributes to the regulation of gene expression. The nuclear space is compartmentalized in several domains such as the nucleolus, chromocentres, telomeres, protein bodies, and the nuclear periphery without the presence of a membrane around these domains. The role of these domains and their possible impact on nuclear activities is currently under intense investigation. In this review, we discuss new data from research in plants that clarify functional links between the organization of different nuclear domains and plant genome function with an emphasis on the potential of this organization for gene regulation.

Indexed as

Cell NucleusChromatinCell NucleolusGene Expression RegulationPlantsChromatin3D Chromatin organizationchromocentresgene expressionliquid–liquid phase separation (LLPS)nuclear bodiesnuclear domainsnuclear peripherynucleolustelomerestopologically associated domains (TADs)

Identifiers

PMID32556244
PMCPMC8604271

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.