ArticleGenetics and molecular biology2020
Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene.
Article in Genetics and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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13 citing papers in PubMed.
- Sequence dynamics and plastome evolution: decoding the complete chloroplast genome of Oenothera drummondii and comparative analysis within Oenothera (Onagraceae).Functional & integrative genomics · 2025Article
- Phytochemical Diversity and Therapeutic Potential ofACS omega · 2025Review
- Novel perspectives on plastome evolution in Onagraceae.AoB PLANTS · 2025Article
- Complete chloroplast genome characterization of three Plagiomnium species and the phylogeny of family Mniaceae.Genetica · 2024Article
- Decoding the Chloroplast Genome ofInternational journal of molecular sciences · 2024Article
- Complete plastid genome of Iris orchioides and comparative analysis with 19 Iris plastomes.PloS one · 2024Article
- The complete sequence of chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
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- The complete chloroplast genome of a fast-growing treeMitochondrial DNA. Part B, Resources · 2023Article
- Plastid Phylogenomics Provide Evidence to Accept Two New Members ofInternational journal of molecular sciences · 2022Article
- New plastomes of eight Ipomoea species and four putative hybrids from Eastern Amazon.PloS one · 2022Article
- Structural and evolutive features of the Plinia phitrantha and P. cauliflora plastid genomes and evolutionary relationships within tribe Myrteae (Myrtaceae).Genetics and molecular biology · 2022Article
- Perspectives in Myrtaceae evolution from plastomes and nuclear phylogenies.Genetics and molecular biology · 2022Article
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7 authors.
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Abstract
Plastomes are very informative structures for comparative phylogenetic and evolutionary analyses. We sequenced and analyzed the complete plastome of Campomanesia xanthocarpa and compared its gene order, structure, and evolutionary characteristics within Myrtaceae. Analyzing 48 species of Myrtaceae, we identified six genes representing 'hotspots' of variability within the plastomes (ycf2, atpA, rpoC2, pcbE, ndhH and rps16), and performed phylogenetic analyses based on: (i) the ycf2 gene, (ii) all the six genes identified as 'hotspots' of variability, and (iii) the genes identified as 'hotspots' of variability, except the ycf2 gene. The structure, gene order, and gene content of the C. xanthocarpa plastome are similar to other Myrtaceae species. Phylogenetic analyses revealed the ycf2 gene as a promissing region for barcoding within this family, having also a robust phylogenetic signal. The synonymous and nonsynonymous substitution rates and the Ka/Ks ratio revealed low values for the ycf2 gene among C. xanthocarpa and the other 47 analyzed species of Myrtaceae, with moderate purifying selection acting on this gene. The average nucleotide identity (ANI) analysis of the whole plastomes produced phylogenetic trees supporting the monophyly of three Myrtaceae tribes. The findings of this study provide support for planning conservation, breeding, and biotechnological programs for this species.
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