Evidence map›Paper›PMID 32555720›Full record

ArticlePloS one2020

Genomic diversity of bacteriophages infecting Microbacterium spp.

Deborah Jacobs-Sera, Lawrence A Abad, Richard M Alvey, Kirk R Anders, Haley G Aull, Suparna S Bhalla, Lawrence S Blumer, David W Bollivar, J Alfred Bonilla, Kristen A Butela and 45 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 70 citations in OpenAlex.

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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

55 authors at 20 institutions in 2 countries.

Deborah Jacobs-SeraDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Lawrence A AbadDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Richard M AlveyDepartment of Biology, Illinois Wesleyan University, Bloomington, Illinois, United States of America.
Kirk R AndersDepartment of Biology, Gonzaga University, Spokane, Washington, United States of America.ORCID 0000-0002-3372-1379
Haley G AullDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Suparna S BhallaDepartment of Natural Sciences, Mount Saint Mary College, Newburgh, New York, United States of America.
Lawrence S BlumerDepartment of Biology, Morehouse College, Atlanta, Georgia, United States of America.
David W BollivarDepartment of Biology, Illinois Wesleyan University, Bloomington, Illinois, United States of America.ORCID 0000-0002-9378-3408
J Alfred BonillaDepartment of Biology, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Kristen A ButelaDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Roy J CoomansDepartment of Biology, North Carolina A&T State University, Greensboro, North Carolina, United States of America.
Steven G CresawnDepartment of Biology, James Madison University, Harrisonburg, Virginia, United States of America.
Tom D'EliaDepartment of Biological Sciences, Indian River State College, Fort Pierce, Florida, United States of America.
Arturo DiazDepartment of Biology, La Sierra University, Riverside, California, United States of America.ORCID 0000-0002-4174-8950
Ashley M DivensDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Nicholas P EdgingtonDepartment of Biology, Southern Connecticut State University, New Haven, Connecticut, United States of America.ORCID 0000-0002-4424-1741
Gregory D FrederickDepartment of Biology and Kinesiology, LeTourneau University, Longview, Texas, United States of America.ORCID 0000-0003-0936-2430
Maria D GaineyDepartment of Chemistry & Physics, Western Carolina University, Cullowhee, North Carolina, United States of America.
Rebecca A GarlenaDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Kenneth W GrantDepartment of Pathology, Wake Forest Baptist Health, Winston-Salem, North Carolina, United States of America.
Susan M R GurneyDepartment of Biology, Drexel University, Philadelphia, Pennsylvania, United States of America.
Heather L HendricksonSchool of Natural and Computational Sciences, Massey University, Auckland, New Zealand.
Lee E HughesDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Margaret A KennaDepartment of Biological Sciences, Lehigh University, Bethlehem, Pennsylvania, United States of America.
Karen K KlyczekDepartment of Biology, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.ORCID 0000-0001-7882-0429
Hari KotturiDepartment of Biology, University of Central Oklahoma, Edmond, Oklahoma, United States of America.
Travis N MavrichDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Angela L McKinneyDepartment of Biology, Nebraska Wesleyan University, Lincoln, Nebraska, United States of America.
Evan C MerkhoferDepartment of Natural Sciences, Mount Saint Mary College, Newburgh, New York, United States of America.
Jordan Moberg ParkerDepartment of Microbiology, Immunology, & Molecular Genetics, University of California, Los Angeles, California, United States of America.ORCID 0000-0003-1445-9587
Sally D MolloyDepartment of Molecular and Biomedical Sciences, University of Maine, Orono, Maine, United States of America.
Denise L MontiDepartment of Biology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Dana A Pape-ZambitoDepartment of Biological Sciences, University of the Sciences in Philadelphia, Philadelphia, Pennsylvania, United States of America.
Richard S PollenzDepartment Cell Biology, Microbiology and Molecular Biology, University of South Florida, Tampa, Florida, United States of America.
Welkin H PopeDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Nathan S ReynaDepartment of Biology, Ouachita Baptist University, Arkadelphia, Arkansas, United States of America.
Claire A RinehartDepartment of Biology, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Daniel A RussellDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Christopher D ShafferDepartment of Biology, University of Washington in St. Louis, St. Louis, Missouri, United States of America.
Viknesh SivanathanHoward Hughes Medical Institute, Chevy Chase, Maryland, United States of America.
Ty H StonerDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Joseph StukeyBiology Department, Hope College, Holland, Michigan, United States of America.
C Nicole SunnenDepartment of Biological Sciences, University of the Sciences, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0003-4881-9990
Sara S TolsmaBiology Department, Northwestern College, Orange City, Iowa, United States of America.
Philippos K TsourkasSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, Nevada, United States of America.
Jamie R WallenDepartment of Chemistry & Physics, Western Carolina University, Cullowhee, North Carolina, United States of America.
Vassie C WareDepartment of Biological Sciences, Lehigh University, Bethlehem, Pennsylvania, United States of America.ORCID 0000-0003-1604-5628
Marcie H WarnerDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Jacqueline M WashingtonDepartment of Natural Sciences, Nyack College, Nyack, New York, United States of America.
Kristi M WestoverDepartment of Biology, Winthrop University, Rock Hill, South Carolina, United States of America.
JoAnn L Whitefleet-SmithDepartment of Biology & Biotechnology, Worcester Polytechnic Institute, Worcester, Massachusetts, United States of America.
Helen I Wiersma-KochDepartment of Biological Sciences, Indian River State College, Fort Pierce, Florida, United States of America.
Daniel C WilliamsDepartment of Biology, Coastal Carolina University, Conway, South Carolina, United States of America.
Kira M ZackDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Graham F HatfullDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0002-6705-6821
University of Pittsburgh · USIllinois Wesleyan University · USIndian River State College · USLehigh University · USMount Saint Mary College · USUniversity of the Sciences · USUniversity of Wisconsin–River Falls · USWestern Carolina University · USAtrium Health Wake Forest Baptist · USCoastal Carolina University · USDrexel University · USGonzaga University · USHope College · USHoward Hughes Medical Institute · USJames Madison University · USLa Sierra University · USLeTourneau University · USMassey University · NZMorehouse College · USNebraska Wesleyan University · US

Funding

Bacteriophage diversity, dynamics, function, and exploitationR35GM131729 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Graham F. Hatfull · 2019 to 2026
$3.6M
Dynamics of viral host range evolutionR01GM116884 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HATFULL, GRAHAM F. · 2015 to 2019
$2.0M
Howard Hughes Medical Institute 54308198Howard Hughes Medical Institute GT12053NIGMS NIH HHS R01 GM116884NIGMS NIH HHS R35 GM131729
6 · The paper itself

Abstract

The bacteriophage population is vast, dynamic, old, and genetically diverse. The genomics of phages that infect bacterial hosts in the phylum Actinobacteria show them to not only be diverse but also pervasively mosaic, and replete with genes of unknown function. To further explore this broad group of bacteriophages, we describe here the isolation and genomic characterization of 116 phages that infect Microbacterium spp. Most of the phages are lytic, and can be grouped into twelve clusters according to their overall relatedness; seven of the phages are singletons with no close relatives. Genome sizes vary from 17.3 kbp to 97.7 kbp, and their G+C% content ranges from 51.4% to 71.4%, compared to ~67% for their Microbacterium hosts. The phages were isolated on five different Microbacterium species, but typically do not efficiently infect strains beyond the one on which they were isolated. These Microbacterium phages contain many novel features, including very large viral genes (13.5 kbp) and unusual fusions of structural proteins, including a fusion of VIP2 toxin and a MuF-like protein into a single gene. These phages and their genetic components such as integration systems, recombineering tools, and phage-mediated delivery systems, will be useful resources for advancing Microbacterium genetics.

Indexed as

Genetic VariationGenome, ViralActinobacteriaBacteriophagesBase CompositionDNA, ViralGenes, ViralGenomicsPhylogenyViral Fusion ProteinsDNA, ViralViral Fusion Proteins

Identifiers

PMID32555720
PMCPMC7302621
OpenAlexW3036430987

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.