Evidence map›Paper›PMID 32555368›Full record

ArticleLeukemia2020

Synonymous GATA2 mutations result in selective loss of mutated RNA and are common in patients with GATA2 deficiency.

Emilia J Kozyra, Victor B Pastor, Stylianos Lefkopoulos, Sushree S Sahoo, Hauke Busch, Rebecca K Voss, Miriam Erlacher, Dirk Lebrecht, Enikoe A Szvetnik, Shinsuke Hirabayashi and 30 more

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Article in Leukemia, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 19 institutions in 16 countries.

Emilia J KozyraDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Victor B PastorDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Stylianos LefkopoulosFaculty of Biology, University of Freiburg, Schänzlestraße 1, 79104, Freiburg, Germany.
Sushree S SahooDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Hauke BuschInstitute of Molecular Medicine and Cell Research, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0003-4763-4521
Rebecca K VossDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Miriam ErlacherDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0002-7261-1447
Dirk LebrechtDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Enikoe A SzvetnikDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Shinsuke HirabayashiDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Ramunė PasaulienėVilnius University Hospital Santaros Klinikos, Center for Pediatric Oncology and Hematology, Bone Marrow Transplantations Unit, Vilnius, Lithuania.
Lucia PedaceDepartment of Pediatric Hematology and Oncology, Istituto di Ricovero e Cura a Carattere Scientifico Ospedale Pediatrico Bambino Gesù, Rome, Italy.
Marco TartagliaGenetics and Rare Diseases Research Division, Istituto di Ricovero e Cura a Carattere Scientifico Ospedale Pediatrico Bambino Gesù, Rome, Italy.
Christian KlemannDepartment of Pediatric Pneumology, Allergy and Neonatology, Hannover Medical School, Hannover, Germany.
Patrick MetzgerFaculty of Biology, University of Freiburg, Schänzlestraße 1, 79104, Freiburg, Germany.ORCID http://orcid.org/0000-0002-2451-1943
Melanie BoerriesGerman Cancer Consortium (DKTK), Freiburg, Germany.
Albert CatalaDepartment of Hematology and Oncology, Hospital Sant Joan de Déu, Barcelona, Spain.ORCID http://orcid.org/0000-0003-0133-1752
Henrik HasleDepartment of Pediatrics, Aarhus University Hospital Skejby, Aarhus, Denmark.ORCID http://orcid.org/0000-0003-3976-9231
Valerie de HaasDutch Childhood Oncology Group (DCOG), Princess Máxima Centre, Utrecht, The Netherlands.
Krisztián KállayCentral Hospital of Southern Pest-National Institute of Hematology and Infectious Diseases, Budapest, Hungary.ORCID http://orcid.org/0000-0002-4328-9612
Riccardo MasettiDepartment of Pediatric Oncology and Hematology, University of Bologna, Bologna, Italy.ORCID http://orcid.org/0000-0002-1264-057X
Barbara De MoerlooseDepartment of Pediatric Hematology-Oncology and Stem Cell Transplantation, Ghent University Hospital, Ghent, Belgium.
Michael DworzakSt. Anna Children´s Hospital and Cancer Research Institute, Pediatric Clinic, Medical University of Vienna, Vienna, Austria.
Markus SchmuggeDepartment of Hematology and Oncology, University Children's Hospital, Zurich, Switzerland.
Owen SmithPaediatric Oncology and Haematology, Our Lady's Children's Hospital Crumlin, Dublin, Ireland.
Jan StarýDepartment of Pediatric Hematology and Oncology, Charles University and University Hospital Motol, Prague, Czech Republic.
Ester MejstrikovaDepartment of Pediatric Hematology and Oncology, Charles University and University Hospital Motol, Prague, Czech Republic.
Marek UssowiczDepartment of Paediatric Bone Marrow Transplantation, Oncology and Hematology, Medical University of Wroclaw, Wroclaw, Poland.ORCID http://orcid.org/0000-0001-5725-4835
Emma MorrisInstitute of Immunity and Transplantation, University College London (UCL), London, UK.ORCID http://orcid.org/0000-0003-4834-1130
Preeti SinghInstitute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, UK.
Matthew CollinInstitute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, UK.
Marta DereckaDepartment of Cellular and Molecular Immunology, Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.
Gudrun GöhringInstitute of Human Genetics, Hannover Medical School, Hannover, Germany.
Christian FlothoDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Brigitte StrahmDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Franco LocatelliDepartment of Pediatric Hematology and Oncology, Istituto di Ricovero e Cura a Carattere Scientifico Ospedale Pediatrico Bambino Gesù, Rome, Italy.
Charlotte M NiemeyerDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Eirini TrompoukiDepartment of Cellular and Molecular Immunology, Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.ORCID http://orcid.org/0000-0002-7242-8810
Marcin W WlodarskiDivision of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany. marcin.wlodarski@stjude.org.ORCID http://orcid.org/0000-0001-6638-9643
European Working Group of MDS in Childhood (EWOG-MDS)
University of Freiburg · DEBambino Gesù Children's Hospital · ITCharles University · CZMedizinische Hochschule Hannover · DENIHR Newcastle Biomedical Research Centre · GBSt. Jude Children's Research Hospital · USAarhus University Hospital · DKChildren's Health Ireland at Crumlin · IEGhent University Hospital · BEHospital Sant Joan de Déu Barcelona · ESMax Planck Institute of Immunobiology and Epigenetics · DENational Center for Epidemiology · HUNational Health Service · GBPrincess Máxima Center · NLSt Anna Children's Hospital · ATUniversity Children's Hospital Zurich · CHUniversity of Bologna · ITUniversity of Wrocław · PLVilnius University · LT

Funding

Medical Research Council MR/P002005/1
6 · The paper itself

Abstract

Deficiency of the transcription factor GATA2 is a highly penetrant genetic disorder predisposing to myelodysplastic syndromes (MDS) and immunodeficiency. It has been recognized as the most common cause underlying primary MDS in children. Triggered by the discovery of a recurrent synonymous GATA2 variant, we systematically investigated 911 patients with phenotype of pediatric MDS or cellular deficiencies for the presence of synonymous alterations in GATA2. In total, we identified nine individuals with five heterozygous synonymous mutations: c.351C>G, p.T117T (N = 4); c.649C>T, p.L217L; c.981G>A, p.G327G; c.1023C>T, p.A341A; and c.1416G>A, p.P472P (N = 2). They accounted for 8.2% (9/110) of cases with GATA2 deficiency in our cohort and resulted in selective loss of mutant RNA. While for the hotspot mutation (c.351C>G) a splicing error leading to RNA and protein reduction was identified, severe, likely late stage RNA loss without splicing disruption was found for other mutations. Finally, the synonymous mutations did not alter protein function or stability. In summary, synonymous GATA2 substitutions are a new common cause of GATA2 deficiency. These findings have broad implications for genetic counseling and pathogenic variant discovery in Mendelian disorders.

Indexed as

AdolescentAdultChildChild, PreschoolFemaleGATA2 DeficiencyGATA2 Transcription FactorGenetic Association StudiesGenetic Predisposition to DiseaseGerm-Line MutationHeterozygoteHumansImmunologic Deficiency SyndromesMaleMyelodysplastic SyndromesPhenotypeGATA2 protein, humanGATA2 Transcription FactorRNA

Identifiers

PMID32555368
PMCPMC7515837
OpenAlexW3035961828

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