Evidence map›Paper›PMID 32555344›Full record

ArticleScientific reports2020

WNT and inflammatory signaling distinguish human Fallopian tube epithelial cell populations.

Ian M Rose, Mallikarjun Bidarimath, Alex Webster, Andrew K Godwin, Andrea Flesken-Nikitin, Alexander Yu Nikitin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Addressing Key Questions in Organoid Models: Who, Where, How, and Why?International journal of molecular sciences · 2023
    Review
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ian M RoseDepartment of Biomedical Sciences and Cornell Stem Cell Program, Cornell University, Ithaca, New York, USA.
Mallikarjun BidarimathDepartment of Biomedical Sciences and Cornell Stem Cell Program, Cornell University, Ithaca, New York, USA.
Alex WebsterUniversity of Kansas Cancer Center, Kansas City, Kansas, USA.
Andrew K GodwinUniversity of Kansas Cancer Center, Kansas City, Kansas, USA.
Andrea Flesken-NikitinDepartment of Biomedical Sciences and Cornell Stem Cell Program, Cornell University, Ithaca, New York, USA. af78@cornell.edu.
Alexander Yu NikitinDepartment of Biomedical Sciences and Cornell Stem Cell Program, Cornell University, Ithaca, New York, USA. an58@cornell.edu.
Cornell University · USThe University of Kansas Cancer Center · US

Funding

Transgenic & Gene-Targeting Shared ResourceP30CA168524 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI NICOLE L NOLLEN · 2012 to 2026
$40.1M
Using Integrated Omics to Identify Dysfunctional Genetic Mechanisms Influencing Schizophrenia and Sleep DisturbancesP20GM130423 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ANDREW K. GODWIN · 2019 to 2026
$21.5M
Modeling metastasis by controlled inactivation of RbR01CA096823 · NCI · CORNELL UNIVERSITY ITHACA · PI NIKITIN, ALEXANDER Y. · 2002 to 2012
$2.7M
Origins of Ovarian CarcinomaR01CA182413 · NCI · CORNELL UNIVERSITY · PI NIKITIN, ALEXANDER Y. · 2015 to 2019
$1.8M
Neuroendocrine mechanisms of prostate cancer progressionR01CA197160 · NCI · CORNELL UNIVERSITY · PI NIKITIN, ALEXANDER Y. · 2015 to 2020
$1.8M
Research and Career Training in Vertebrate Developmental GenomicsT32HD057854 · NICHD · CORNELL UNIVERSITY · PI SCHIMENTI, JOHN C · 2010 to 2020
$1.3M
Zeiss LSM710 Confocal Microscope for Shared Imaging FacilityS10RR025502 · NCRR · CORNELL UNIVERSITY · PI WILLIAMS, REBECCA M · 2009 to 2009
$500k
Determinants of Metastatic ProgressionR56CA096823 · NCI · CORNELL UNIVERSITY · PI NIKITIN, ALEXANDER Y · 2007 to 2007
$287k
NCI NIH HHS P30 CA168524NCI NIH HHS R01 CA096823NCI NIH HHS R01 CA182413NCI NIH HHS R01 CA197160NCI NIH HHS R56 CA096823NCRR NIH HHS S10 RR025502NICHD NIH HHS T32 HD057854NIGMS NIH HHS P20 GM130423
6 · The paper itself

Abstract

Many high-grade serous carcinomas (HGSCs) likely originate in the distal region of the Fallopian tube's epithelium (TE) before metastasizing to the ovary. Unfortunately, molecular mechanisms promoting malignancy in the distal TE are obfuscated, largely due to limited primary human TE gene expression data. Here we report an in depth bioinformatic characterization of 34 primary TE mRNA-seq samples. These samples were prepared from proximal and distal TE regions of 12 normal Fallopian tubes. Samples were segregated based on their aldehyde dehydrogenase (ALDH) activity. Distal cells form organoids with higher frequency and larger size during serial organoid formation assays when compared to proximal cells. Consistent with enrichment for stem/progenitor cells, ALDH+ cells have greater WNT signaling. Comparative evaluation of proximal and distal TE cell population's shows heightened inflammatory signaling in distal differentiated (ALDH-) TE. Furthermore, comparisons of proximal and distal TE cell populations finds that the distal ALDH+ TE cells exhibit pronounced expression of gene sets characteristic of HGSC sub-types. Overall, our study indicates increased organoid forming capacity, WNT/inflammatory signaling, and HGSC signatures underlie differences between distal and proximal regions of the human TE. These findings provide the basis for further mechanistic studies of distal TE susceptibility to the malignant transformation.

Indexed as

Computational BiologyWnt Signaling PathwayAldehyde DehydrogenaseCell DifferentiationEpithelial CellsFallopian TubesFemaleGene Expression RegulationHumansInflammationAldehyde Dehydrogenase

Identifiers

PMID32555344
PMCPMC7300082
OpenAlexW3036658283

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.