Evidence map›Paper›PMID 32555229›Full record

ArticleScientific reports2020

Cell Atlas of The Human Fovea and Peripheral Retina.

Wenjun Yan, Yi-Rong Peng, Tavé van Zyl, Aviv Regev, Karthik Shekhar, Dejan Juric, Joshua R Sanes

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 196 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
196citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

196 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Dynamic changes in ocular shape during human development and its implications for retina fovea formation.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024
    Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. celltypeEnrich: a consensus-based scRNA-seq cluster annotation tool.bioRxiv : the preprint server for biology · 2026
    Article
  7. Review
  8. Review
  9. Review
  10. Approaching a connectome of the human foveal retina.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  11. Article
  12. Article
  13. Review
  14. High-Fidelity Backpropagation through Primate Foveal Cones.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Article
  15. Convergent re-evolution of CNS structures: focus on the fovea.Current opinion in genetics & development · 2026
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

136 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Wenjun Yan *Department of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA, 02138, USA.
Yi-Rong Peng *Department of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA, 02138, USA.
Tavé van Zyl *Department of Ophthalmology, Harvard Medical School and Massachusetts Eye and Ear, Boston, MA, 02114, USA.
Aviv RegevHoward Hughes Medical Institute, Koch Institute of Integrative Cancer Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02140; and Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Karthik ShekharDepartment of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA, 02138, USA.
Dejan JuricMassachusetts General Hospital Cancer Center, Department of Medicine, Harvard Medical School, Boston, USA.
Joshua R SanesDepartment of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA, 02138, USA. sanesj@mcb.harvard.edu.

Funding

Mass Eye and Ear-Vision Clinical Scientist Development ProgramK12EY016335 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI Reza Dana · 2004 to 2026
$12.3M
Comprehensive Classification Of Neuronal Subtypes By Single Cell TranscriptomicsU01MH105960 · NIMH · HARVARD UNIVERSITY · PI REGEV, AVIV, SANES, JOSHUA R · 2014 to 2016
$4.5M
Combinatorial roles of cadherins in retinal circuit assembly.R01EY022073 · NEI · HARVARD UNIVERSITY · PI SANES, JOSHUA R · 2012 to 2020
$3.7M
Defining cell types of foveal and peripheral retina by high-throughput, single-celltranscriptional profilingR21EY028633 · NEI · HARVARD UNIVERSITY · PI DO, MICHAEL TRI HOANG, SANES, JOSHUA R · 2018 to 2019
$487k
Uncovering the molecular identity of retinal cell types, and their responses to nerve injury using single-cell transcriptomicsK99EY028625 · NEI · BROAD INSTITUTE, INC. · PI SHEKHAR, KARTHIK · 2018 to 2019
$215k
NEI NIH HHS K12 EY016335NEI NIH HHS K99 EY028625NEI NIH HHS R01 EY022073NEI NIH HHS R21 EY028633NIMH NIH HHS U01 MH105960
6 · The paper itself

Abstract

Most irreversible blindness results from retinal disease. To advance our understanding of the etiology of blinding diseases, we used single-cell RNA-sequencing (scRNA-seq) to analyze the transcriptomes of ~85,000 cells from the fovea and peripheral retina of seven adult human donors. Utilizing computational methods, we identified 58 cell types within 6 classes: photoreceptor, horizontal, bipolar, amacrine, retinal ganglion and non-neuronal cells. Nearly all types are shared between the two retinal regions, but there are notable differences in gene expression and proportions between foveal and peripheral cohorts of shared types. We then used the human retinal atlas to map expression of 636 genes implicated as causes of or risk factors for blinding diseases. Many are expressed in striking cell class-, type-, or region-specific patterns. Finally, we compared gene expression signatures of cell types between human and the cynomolgus macaque monkey, Macaca fascicularis. We show that over 90% of human types correspond transcriptomically to those previously identified in macaque, and that expression of disease-related genes is largely conserved between the two species. These results validate the use of the macaque for modeling blinding disease, and provide a foundation for investigating molecular mechanisms underlying visual processing.

Indexed as

AnimalsAtlases as TopicBlindnessFovea CentralisHumansMacaca fascicularisRetinaRNA-SeqSpecies SpecificityTranscriptome

Identifiers

PMID32555229
PMCPMC7299956

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.