Evidence map›Paper›PMID 32553838›Full record

ArticleThe Journal of pediatrics2020

The Impact of Rapid Exome Sequencing on Medical Management of Critically Ill Children.

Amanda S Freed, Sarah V Clowes Candadai, Megan C Sikes, Jenny Thies, Heather M Byers, Jennifer N Dines, Mesaki Kenneth Ndugga-Kabuye, Mallory B Smith, Katie Fogus, Heather C Mefford and 9 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of pediatrics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Mastering genetics for your clinic: A step-by-step guide.The Journal of allergy and clinical immunology · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Collaborative efforts to improve genetic testing in the neonatal intensive care unit.Journal of perinatology : official journal of the California Perinatal Association · 2023
    Article
  20. Genomic medicine in neonatal care: progress and challenges.European journal of human genetics : EJHG · 2023
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Amanda S FreedDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA.
Sarah V Clowes CandadaiDepartment of Laboratories, Seattle Children's Hospital, Seattle, WA; Patient-centered Laboratory Utilization Guidance Services (PLUGS), Seattle Children's Hospital, Seattle, WA.
Megan C SikesDivision of Genetic Medicine, Seattle Children's Hospital, Seattle, WA.
Jenny ThiesDivision of Genetic Medicine, Seattle Children's Hospital, Seattle, WA.
Heather M ByersDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA.
Jennifer N DinesDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA.
Mesaki Kenneth Ndugga-KabuyeDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA.
Mallory B SmithDivision of Pediatric Critical Care, Department of Pediatrics, University of Washington, Seattle, WA.
Katie FogusDivision of Genetic Medicine, Seattle Children's Hospital, Seattle, WA.
Heather C MeffordDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Division of Genetic Medicine, Seattle Children's Hospital, Seattle, WA; Brotman Baty Institute for Precision Medicine, Seattle, WA.
Christina LamDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Division of Genetic Medicine, Seattle Children's Hospital, Seattle, WA; Brotman Baty Institute for Precision Medicine, Seattle, WA; Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA.
Margaret P AdamDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Division of Genetic Medicine, Seattle Children's Hospital, Seattle, WA.
Angela SunDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Division of Genetic Medicine, Seattle Children's Hospital, Seattle, WA.
John K McGuireDivision of Pediatric Critical Care, Department of Pediatrics, University of Washington, Seattle, WA.
Robert DiGeronimoDivision of Neonatology, Department of Pediatrics, University of Washington, Seattle, WA.
Katrina M DippleDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Division of Genetic Medicine, Seattle Children's Hospital, Seattle, WA; Center for Clinical and Translational Research, Seattle Children's Research Institute, Seattle, WA.
Gail H DeutschDepartment of Pathology, University of Washington and Seattle Children's Hospital, Seattle, WA.
Zeenia C BillimoriaDivision of Neonatology, Department of Pediatrics, University of Washington, Seattle, WA.
James T BennettDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Division of Genetic Medicine, Seattle Children's Hospital, Seattle, WA; Brotman Baty Institute for Precision Medicine, Seattle, WA; Center for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA. Electronic address: jtbenn@uw.edu.
University of Washington · USSeattle Children's Hospital · US

Funding

Medical Genetics Training GrantT32GM007454 · NIGMS · UNIVERSITY OF WASHINGTON · PI Gail Pairitz Jarvik, Andrew Ben Stergachis · 1985 to 2026
$6.9M
NIGMS NIH HHS T32 GM007454
6 · The paper itself

Abstract

objectivesTo evaluate the clinical usefulness of rapid exome sequencing (rES) in critically ill children with likely genetic disease using a standardized process at a single institution. To provide evidence that rES with should become standard of care for this patient population. STUDY

designWe implemented a process to provide clinical-grade rES to eligible children at a single institution. Eligibility included (a) recommendation of rES by a consulting geneticist, (b) monogenic disorder suspected, (c) rapid diagnosis predicted to affect inpatient management, (d) pretest counseling provided by an appropriate provider, and (e) unanimous approval by a committee of 4 geneticists. Trio exome sequencing was sent to a reference laboratory that provided verbal report within 7-10 days. Clinical outcomes related to rES were prospectively collected. Input from geneticists, genetic counselors, pathologists, neonatologists, and critical care pediatricians was collected to identify changes in management related to rES.

resultsThere were 54 patients who were eligible for rES over a 34-month study period. Of these patients, 46 underwent rES, 24 of whom (52%) had at least 1 change in management related to rES. In 20 patients (43%), a molecular diagnosis was achieved, demonstrating that nondiagnostic exomes could change medical management in some cases. Overall, 84% of patients were under 1 month old at rES request and the mean turnaround time was 9 days.

conclusionsrES testing has a significant impact on the management of critically ill children with suspected monogenic disease and should be considered standard of care for tertiary institutions who can provide coordinated genetics expertise.

Indexed as

Exome SequencingGenetic TestingAdolescentChildChild, PreschoolCritical CareCritical IllnessFemaleGenetic Diseases, InbornHumansInfantInfant, NewbornMalePatient SelectionRetrospective Studiesclinical usefulnesscopy number variants (CNVs)critically illexome sequencinggenomic testingICUrare diseasesecondary findingsutilization management

Identifiers

PMID32553838
PMCPMC7736066
OpenAlexW3035107391

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.