Evidence map›Paper›PMID 32552683›Full record

ArticleBMC plant biology2020

Cold priming uncouples light- and cold-regulation of gene expression in Arabidopsis thaliana.

Andras Bittner, Jörn van Buer, Margarete Baier

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Transcriptomic Study ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Andras BittnerPlant Physiology, Freie Universität Berlin, Dahlem Centre of Plant Sciences, Königin-Luise-Straße 12-16, 14195, Berlin, Germany.
Jörn van BuerPlant Physiology, Freie Universität Berlin, Dahlem Centre of Plant Sciences, Königin-Luise-Straße 12-16, 14195, Berlin, Germany.
Margarete BaierPlant Physiology, Freie Universität Berlin, Dahlem Centre of Plant Sciences, Königin-Luise-Straße 12-16, 14195, Berlin, Germany. margarete.baier@fu-berlin.de.ORCID http://orcid.org/0000-0003-1687-8857
Freie Universität Berlin · DE

Funding

Deutsche Forschungsgemeinschaft SFB973-C4
6 · The paper itself

Abstract

backgroundThe majority of stress-sensitive genes responds to cold and high light in the same direction, if plants face the stresses for the first time. As shown recently for a small selection of genes of the core environmental stress response cluster, pre-treatment of Arabidopsis thaliana with a 24 h long 4 °C cold stimulus modifies cold regulation of gene expression for up to a week at 20 °C, although the primary cold effects are reverted within the first 24 h. Such memory-based regulation is called priming. Here, we analyse the effect of 24 h cold priming on cold regulation of gene expression on a transcriptome-wide scale and investigate if and how cold priming affects light regulation of gene expression.

resultsCold-priming affected cold and excess light regulation of a small subset of genes. In contrast to the strong gene co-regulation observed upon cold and light stress in non-primed plants, most priming-sensitive genes were regulated in a stressor-specific manner in cold-primed plant. Furthermore, almost as much genes were inversely regulated as co-regulated by a 24 h long 4 °C cold treatment and exposure to heat-filtered high light (800 μmol quanta m

conclusionA 24 h long priming cold stimulus activates a several days lasting stress memory that controls cold and light regulation of gene expression and adjusts growth and defence regulation in a stressor-specific manner.

Indexed as

Cold TemperatureLightArabidopsisGene ExpressionTranscriptomeArabidopsis thalianaColdDefenceGene expressionGrowthLightMemoryPrimingTriggering

Identifiers

PMID32552683
PMCPMC7301481
OpenAlexW3035901104

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.