Evidence map›Paper›PMID 32550766›Full record

ArticleBiomarker insights2020

High-Quality and High-Yield RNA Extraction Method From Whole Human Saliva.

Vaibhav Gandhi, Mara H O'Brien, Sumit Yadav

Open access · goldAbstract read
In one paragraph

Article in Biomarker insights, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  14. Salivary Exosomes in Health and Disease: Future Prospects in the Eye.International journal of molecular sciences · 2023
    Review
  15. Obtaining miRNA from Saliva-Comparison of Sampling and Purification Methods.International journal of molecular sciences · 2023
    Article
  16. One-Year Update on Salivary Diagnostic of COVID-19.Frontiers in public health · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Vaibhav GandhiDivision of Orthodontics, Department of Craniofacial Sciences, University of Connecticut Health, Farmington, CT, USA.
Mara H O'BrienDivision of Orthodontics, Department of Craniofacial Sciences, University of Connecticut Health, Farmington, CT, USA.
Sumit YadavDivision of Orthodontics, Department of Craniofacial Sciences, University of Connecticut Health, Farmington, CT, USA.ORCID https://orcid.org/0000-0002-2434-7995
UConn Health · US

Funding

Mechanism of BMP2 regulation of Mandibular Condylar Cartilage GrowthK08DE025914 · NIDCR · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI YADAV, SUMIT · 2017 to 2021
$947k
NIDCR NIH HHS K08 DE025914
6 · The paper itself

Abstract

backgroundHuman saliva has been identified as a novel, practical, and noninvasive source of biomarkers and genetic materials. However, it is equally challenging due to the availability of an abundance of impurities in the form of microbes and other proteinaceous compounds. The objective of this study was to develop a robust, reproducible, and economic method of extracting high-yield and high-quality RNA from whole human saliva.

methodsThe modified TRIzol protocol was developed to extract RNA from saliva (n = 14), followed by complementary DNA synthesis and reverse transcription quantitative polymerase chain reaction analyses for the genes encoding

resultsWith the modified TRIzol lysis protocol, a high yield of total RNA, on average 12.34 μg, from saliva was extracted compared with on average 0.2 μg with a spin column-based method. The average RQI (RNA quality index) with the TRIzol method was 7.86, which is also comparable with that of the spin column-based method (RQI = 7.58). QuantiFluor dye used for RNA quantification showed a 16-fold higher yield of RNA concentration using our TRIzol protocol.

conclusionsOur modified TRIzol protocol is a reproducible method to extract RNA from whole human saliva which can be used for gene expression analysis. This method allows also ensures the quality of RNA required for specific applications such as RNA sequencing.

Indexed as

Gene expressionhuman salivaRNARNA quantificationtranscriptome analysis

Identifiers

PMID32550766
PMCPMC7281883
OpenAlexW3035154102

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.