Evidence map›Paper›PMID 32544292›Full record

ArticleTransboundary and emerging diseases2021

Genomic characterization of multidrug-resistant ESBL-producing Escherichia coli ST58 causing fatal colibacillosis in critically endangered Brazilian merganser (Mergus octosetaceus).

Danny Fuentes-Castillo, Pedro Enrique Navas-Suárez, Maria Fernanda Gondim, Fernanda Esposito, Carlos Sacristán, Herrison Fontana, Bruna Fuga, Camila Piovani, Robert Kooij, Nilton Lincopan and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Transboundary and emerging diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
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  13. Colistin-resistant Enterobacter kobei carrying mcr-9.1 and blaTransboundary and emerging diseases · 2021
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  14. Genomic Epidemiology of Shiga Toxin-ProducingAnimals : an open access journal from MDPI · 2021
    Article
  15. Article
  16. Risk Factors and Prevalence ofFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Danny Fuentes-CastilloDepartment of Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, Brazil.ORCID https://orcid.org/0000-0003-2845-4330
Pedro Enrique Navas-SuárezDepartment of Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, Brazil.
Maria Fernanda GondimZooparque Itatiba, Itatiba, Brazil.
Fernanda EspositoOne Health Brazilian Resistance Project (OneBR), São Paulo, Brazil.
Carlos SacristánDepartment of Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, Brazil.ORCID https://orcid.org/0000-0002-6111-6301
Herrison FontanaOne Health Brazilian Resistance Project (OneBR), São Paulo, Brazil.
Bruna FugaOne Health Brazilian Resistance Project (OneBR), São Paulo, Brazil.
Camila PiovaniZooparque Itatiba, Itatiba, Brazil.
Robert KooijZooparque Itatiba, Itatiba, Brazil.
Nilton LincopanOne Health Brazilian Resistance Project (OneBR), São Paulo, Brazil.ORCID https://orcid.org/0000-0003-0161-5800
José Luiz Catão-DiasDepartment of Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, Brazil.
Universidade de São Paulo · BRAção Educativa · BR

Funding

Bill and Melinda Gates Foundation, Grand Challenges Explorations Brazil - New approaches to characterize the global burden of antimicrobial resistance, grant OPP1193112Comisión Nacional de Investigación Científica y Tecnológica CONICYT BCH 72170436Conselho Nacional de Desenvolvimento Científico e Tecnológico 212249/2017-9Conselho Nacional de Desenvolvimento Científico e Tecnológico 304999-18Conselho Nacional de Desenvolvimento Científico e Tecnológico 312249/2017-9Conselho Nacional de Desenvolvimento Científico e Tecnológico 312249/2017-9,Conselho Nacional de Desenvolvimento Científico e Tecnológico 433128/2018-6Conselho Nacional de Desenvolvimento Científico e Tecnológico 433128/2018-6,Conselho Nacional de Desenvolvimento Científico e Tecnológico 443819/2018-1Fundação de Amparo à Pesquisa do Estado de São Paulo: FAPESP 2018/25069-7
6 · The paper itself

Abstract

Even though antimicrobial-resistant bacteria have begun to be detected in wildlife, raising important issues related to their transmission and persistence of clinically important pathogens in the environment, little is known about the role of these bacteria on wildlife health, especially on endangered species. The Brazilian merganser (Mergus octosetaceus) is one of the most threatened waterfowl in the world, classified as Critically Endangered by the International Union for Conservation of Nature. In 2019, a fatal case of sepsis was diagnosed in an 8-day-old Brazilian merganser inhabiting a zoological park. At necropsy, major gross lesions were pulmonary and hepatic congestion. Using microbiologic and genomic methods, we identified a multidrug-resistant (MDR) extended-spectrum β-lactamase (ESBL) CTX-M-8-producing Escherichia coli (designed as PMPU strain) belonging to the international clone ST58, in coelomic cavity, oesophagus, lungs, small intestine and cloaca samples. PMPU strain harboured a broad resistome against antibiotics (cephalosporins, tetracyclines, aminoglycosides, sulphonamides, trimethoprim and quinolones), domestic/hospital disinfectants and heavy metals (arsenic, mercury, lead, copper and silver). Additionally, the virulence of E. coli PMPU strain was confirmed using a wax moth (Galleria mellonella) infection model, and it was supported by the presence of virulence genes encoding toxins, adherence factors, invasins and iron acquisition systems. Broad resistome and virulome of PMPU contributed to therapeutic failure and death of the animal. In brief, we report for the first time a fatal colibacillosis by MDR ESBL-producing E. coli in critically endangered Brazilian merganser, highlighting that besides colonization, critical priority pathogens are threatening wildlife. E. coli ST58 clone has been previously reported in humans, food-producing animals, wildlife and environment, supporting broad adaptation and persistence at human-animal-environment interface.

Indexed as

DucksGenome, BacterialAnimalsAnimals, Wildbeta-LactamasesBird DiseasesBrazilDrug Resistance, Multiple, ViralEscherichia coliEscherichia coli Infectionsbeta-Lactamasesbacterial infectionenterobacteralesESBLvirulencewaterfowlwildlife

Identifiers

PMID32544292
PMCPMC8246901
OpenAlexW3035053051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.