Evidence map›Paper›PMID 32542330›Full record

ArticleBioscience reports2020

The putative Escherichia coli dehydrogenase YjhC metabolises two dehydrated forms of N-acetylneuraminate produced by some sialidases.

Takfarinas Kentache, Léopold Thabault, Alessio Peracchi, Raphaël Frédérick, Guido T Bommer, Emile Van Schaftingen

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Takfarinas KentacheLaboratory of Physiological Chemistry, de Duve Institute, UCLouvain, Brussels, B-1200, Belgium.
Léopold ThabaultMedicinal Chemistry Research Group (CMFA), Louvain Drug Research Institute (LDRI), UCLouvain, Brussels, B-1200, Belgium.
Alessio PeracchiLaboratory of Physiological Chemistry, de Duve Institute, UCLouvain, Brussels, B-1200, Belgium.
Raphaël FrédérickMedicinal Chemistry Research Group (CMFA), Louvain Drug Research Institute (LDRI), UCLouvain, Brussels, B-1200, Belgium.
Guido T BommerLaboratory of Physiological Chemistry, de Duve Institute, UCLouvain, Brussels, B-1200, Belgium.
Emile Van SchaftingenLaboratory of Physiological Chemistry, de Duve Institute, UCLouvain, Brussels, B-1200, Belgium.
de Duve Institute · BEUniversity of Parma · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homologues of the putative dehydrogenase YjhC are found in operons involved in the metabolism of N-acetylneuraminate (Neu5Ac) or related compounds. We observed that purified recombinant YjhC forms Neu5Ac from two dehydrated forms of this compound, 2,7-anhydro-N-acetylneuraminate (2,7-AN) and 2-deoxy-2,3-didehydro-N-acetylneuraminate (2,3-EN) that are produced during the degradation of sialoconjugates by some sialidases. The conversion of 2,7-AN into Neu5Ac is reversible and reaches its equilibrium when the ratio of 2,7-AN to Neu5Ac is ≈1/6. The conversion of 2,3-EN is irreversible, leading to a mixture of Neu5Ac and 2,7-AN. NMR analysis of the reaction catalysed by YjhC on 2,3-EN indicated that Neu5Ac was produced as the α-anomer. All conversions require NAD+ as a cofactor, which is regenerated in the reaction. They appear to involve the formation of keto (presumably 4-keto) intermediates of 2,7-AN, 2,3-EN and Neu5Ac, which were detected by liquid chromatography-mass spectrometry (LC-MS). The proposed reaction mechanism is reminiscent of the one catalysed by family 4 β-glycosidases, which also use NAD+ as a cofactor. Both 2,7-AN and 2,3-EN support the growth of Escherichia coli provided the repressor NanR, which negatively controls the expression of the yjhBC operons, has been inactivated. Inactivation of either YjhC or YjhB in NanR-deficient cells prevents the growth on 2,7-AN and 2,3-EN. This confirms the role of YjhC in 2,7-AN and 2,3-EN metabolism and indicates that transport of 2,7-AN and 2,3-EN is carried out by YjhB, which is homologous to the Neu5Ac transporter NanT.

Indexed as

DNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsKineticsMembrane Transport ProteinsMucolipidosesN-Acetylneuraminic AcidNADOxidoreductasesSubstrate SpecificityDNA-Binding ProteinsEscherichia coli ProteinsMembrane Transport ProteinsN-Acetylneuraminic AcidNADNanR protein, E colinanT protein, E coliOxidoreductasesYjhC protein, E colidehydratasedehydrogenaseEscherichia colisialic acid

Identifiers

PMID32542330
PMCPMC7315737
OpenAlexW3035141920

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.