Evidence map›Paper›PMID 32541663›Full record

ArticleNature communications2020

Structure and mechanism of DNA delivery of a gene transfer agent.

Pavol Bárdy, Tibor Füzik, Dominik Hrebík, Roman Pantůček, J Thomas Beatty, Pavel Plevka

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 110 citations in OpenAlex.

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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Pavol BárdyDepartment of Experimental Biology, Faculty of Science, Masaryk University, 625 00, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-1223-2584
Tibor FüzikCentral European Institute of Technology, Masaryk University, 625 00, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-1190-0210
Dominik HrebíkCentral European Institute of Technology, Masaryk University, 625 00, Brno, Czech Republic.
Roman PantůčekDepartment of Experimental Biology, Faculty of Science, Masaryk University, 625 00, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-3950-675X
J Thomas BeattyDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, V6T 1Z3, BC, Canada.ORCID http://orcid.org/0000-0002-1425-0532
Pavel PlevkaCentral European Institute of Technology, Masaryk University, 625 00, Brno, Czech Republic. pavel.plevka@ceitec.muni.cz.ORCID http://orcid.org/0000-0003-4215-3315
Central European Institute of Technology · CZMasaryk University · CZUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alphaproteobacteria, which are the most abundant microorganisms of temperate oceans, produce phage-like particles called gene transfer agents (GTAs) that mediate lateral gene exchange. However, the mechanism by which GTAs deliver DNA into cells is unknown. Here we present the structure of the GTA of Rhodobacter capsulatus (RcGTA) and describe the conformational changes required for its DNA ejection. The structure of RcGTA resembles that of a tailed phage, but it has an oblate head shortened in the direction of the tail axis, which limits its packaging capacity to less than 4,500 base pairs of linear double-stranded DNA. The tail channel of RcGTA contains a trimer of proteins that possess features of both tape measure proteins of long-tailed phages from the family Siphoviridae and tail needle proteins of short-tailed phages from the family Podoviridae. The opening of a constriction within the RcGTA baseplate enables the ejection of DNA into bacterial periplasm.

Indexed as

Gene Transfer TechniquesBacteriophagesCryoelectron MicroscopyDNA, BacterialGene Expression Regulation, BacterialGene Transfer, HorizontalRhodobacter capsulatusSiphoviridaeDNA, Bacterial

Identifiers

PMID32541663
PMCPMC7296036
OpenAlexW3035719236

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.