Evidence map›Paper›PMID 32540931›Full record

ArticleJournal of bacteriology2020

A Vibrio cholerae Core Genome Multilocus Sequence Typing Scheme To Facilitate the Epidemiological Study of Cholera.

Kevin Y H Liang, Fabini D Orata, Mohammad Tarequl Islam, Tania Nasreen, Munirul Alam, Cheryl L Tarr, Yann F Boucher

Abstract readEvaluation Study
In one paragraph

Article in Journal of bacteriology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  10. Public health aspects ofEFSA journal. European Food Safety Authority · 2024
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  14. Review
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  18. Virulence and resistance patterns ofFrontiers in microbiology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kevin Y H LiangDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.
Fabini D OrataDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.ORCID 0000-0002-6814-5869
Mohammad Tarequl IslamDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.
Tania NasreenDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.
Munirul AlamInfectious Diseases Division, International Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Cheryl L TarrEnteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Yann F BoucherDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada yboucher@ualberta.ca.ORCID 0000-0002-0036-6083

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Core genome multilocus sequence typing (cgMLST) has gained popularity in recent years in epidemiological research and subspecies-level classification. cgMLST retains the intuitive nature of traditional MLST but offers much greater resolution by utilizing significantly larger portions of the genome. Here, we introduce a cgMLST scheme for

Indexed as

AllelesBacterial Typing TechniquesCholeraEpidemiologic StudiesGenome, BacterialGenotypeHumansMultilocus Sequence TypingPhylogenyPolymorphism, Single NucleotideVibrio choleraeYemencgMLSTcholeracore genomeepidemiological surveillancegene-by-gene approachmultilocus sequence typingVibrio choleraewhole-genome sequencing

Identifiers

PMID32540931
PMCPMC7685551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.