Evidence map›Paper›PMID 32539880›Full record

ArticleParasitology2020

Machine learning-based analyses support the existence of species complexes for

Joel L N Barratt, Sarah G H Sapp

Abstract read
In one paragraph

Article in Parasitology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Taxonomy ofParasitology · 2026
    Review
  5. Molecular taxonomic characterisation ofFrontiers in parasitology · 2026
    Article
  6. Molecular taxonomic study ofFrontiers in parasitology · 2026
    Article
  7. Notes on the threadwormInternational journal for parasitology. Parasites and wildlife · 2025
    Article
  8. Article
  9. Review
  10. Genetic diversity withinParasitology · 2025
    Article
  11. Article
  12. Article
  13. Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  14. Is strongyloidiasis a zoonosis from dogs?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  15. AdvancingPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  16. Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  17. Article
  18. Article
  19. Genetic characterization ofInternational journal for parasitology. Parasites and wildlife · 2023
    Article
  20. Parasitology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Joel L N BarrattDivision of Parasitic Diseases and Malaria, Centers for Disease Control and Prevention, Parasitic Diseases Branch, Atlanta, USA.ORCID 0000-0001-8711-2408
Sarah G H SappDivision of Parasitic Diseases and Malaria, Centers for Disease Control and Prevention, Parasitic Diseases Branch, Atlanta, USA.ORCID 0000-0002-5839-6066

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human strongyloidiasis is a serious disease mostly attributable to Strongyloides stercoralis and to a lesser extent Strongyloides fuelleborni, a parasite mainly of non-human primates. The role of animals as reservoirs of human-infecting Strongyloides is ill-defined, and whether dogs are a source of human infection is debated. Published multi-locus sequence typing (MLST) studies attempt to elucidate relationships between Strongyloides genotypes, hosts, and distributions, but typically examine relatively few worms, making it difficult to identify population-level trends. Combining MLST data from multiple studies is often impractical because they examine different combinations of loci, eliminating phylogeny as a means of examining these data collectively unless hundreds of specimens are excluded. A recently-described machine learning approach that facilitates clustering of MLST data may offer a solution, even for datasets that include specimens sequenced at different combinations of loci. By clustering various MLST datasets as one using this procedure, we sought to uncover associations among genotype, geography, and hosts that remained elusive when examining datasets individually. Multiple datasets comprising hundreds of S. stercoralis and S. fuelleborni individuals were combined and clustered. Our results suggest that the commonly proposed 'two lineage' population structure of S. stercoralis (where lineage A infects humans and dogs, lineage B only dogs) is an over-simplification. Instead, S. stercoralis seemingly represents a species complex, including two distinct populations over-represented in dogs, and other populations vastly more common in humans. A distinction between African and Asian S. fuelleborni is also supported here, emphasizing the need for further resolving these taxonomic relationships through modern investigations.

Indexed as

Machine LearningAnimalsComputational BiologyDisease ReservoirsDog DiseasesDogsElectron Transport Complex IVFecesGenes, HelminthGenetic SpeciationGenotypeHaplotypesHumansMultilocus Sequence TypingPhylogenyPrimatesElectron Transport Complex IVRNA, Ribosomal, 18SGeneticsgenotypesmachine learningpopulation structurespecies complexStrongyloides fuelleborniStrongyloides stercoralis

Identifiers

PMID32539880
PMCPMC7443747

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.