Evidence map›Paper›PMID 32539086›Full record

ArticleDatabase : the journal of biological databases and curation2020

ForageGrassBase: molecular resource for the forage grass meadow fescue (Festuca pratensis Huds.).

Jeevan Karloss Antony Samy, Odd Arne Rognli, Mallikarjuna Rao Kovi

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jeevan Karloss Antony SamyDepartment of Plant Sciences (IPV), Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Akershus 1432, Norway.
Odd Arne RognliDepartment of Plant Sciences (IPV), Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Akershus 1432, Norway.
Mallikarjuna Rao KoviDepartment of Plant Sciences (IPV), Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Akershus 1432, Norway.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Meadow fescue (Festuca pratensis Huds.) is one of the most important forage grasses in temperate regions. It is a diploid (2n = 14) outbreeding species that belongs to the genus Festuca. Together with Lolium perenne, they are the most important genera of forage grasses. Meadow fescue has very high quality of yield with good winter survival and persistency. However, extensive genomic resources for meadow fescue have not become available so far. To address this lack of comprehensive publicly available datasets, we have developed functionally annotated draft genome sequences of two meadow fescue genotypes, 'HF7/2' and 'B14/16', and constructed the platform ForageGrassBase, available at http://foragegrass.org/, for data visualization, download and querying. This is the first open-access platform that provides extensive genomic resources related to this forage grass species. The current database provides the most up-to-date draft genome sequence along with structural and functional annotations for genes that can be accessed using Genome Browser (GBrowse), along with comparative genomic alignments to Arabidopsis, L. perenne, barley, rice, Brachypodium and maize genomes. We have integrated homologous search tool BLAST also for the users to analyze their data. Combined, GBrowse, BLAST and downloadable data gives a user-friendly access to meadow fescue genomic resources. To our knowledge, ForageGrassBase is the first genome database dedicated to forage grasses. The current forage grass database provides valuable resources for a range of research fields related to meadow fescue and other forage crop species, as well as for plant research communities in general. The genome database can be accessed at http://foragegrass.org.

Indexed as

Databases, GeneticSoftwareFestucaGenome, PlantSequence AlignmentSequence Analysis, DNA

Identifiers

PMID32539086
PMCPMC7294657

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.