Evidence map›Paper›PMID 32538079›Full record

ArticleACS chemical neuroscience2020

Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor.

Fabio Lolicato, Hanna Juhola, Agata Zak, Pekka A Postila, Annina Saukko, Sami Rissanen, Giray Enkavi, Ilpo Vattulainen, Mariusz Kepczynski, Tomasz Róg

Open access · hybridAbstract read
In one paragraph

Article in ACS chemical neuroscience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Fabio LolicatoDepartment of Physics, University of Helsinki, P.O. Box 64, FI-00014 Helsinki, Finland.ORCID 0000-0001-7537-0549
Hanna JuholaComputational Physics Laboratory, Tampere University, FI-33100 Tampere, Finland.
Agata ZakFaculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Kraków, Poland.
Pekka A PostilaInstitute of Biomedicine, Faculty of Medicine, University of Turku, FI-20014 Turku, Finland.ORCID 0000-0002-2947-7991
Annina SaukkoDepartment of Applied Physics, University of Eastern Finland, P.O.B. 1627, FI-70211 Kuopio, Finland.
Sami RissanenComputational Physics Laboratory, Tampere University, FI-33100 Tampere, Finland.
Giray EnkaviDepartment of Physics, University of Helsinki, P.O. Box 64, FI-00014 Helsinki, Finland.
Ilpo VattulainenDepartment of Physics, University of Helsinki, P.O. Box 64, FI-00014 Helsinki, Finland.ORCID 0000-0001-7408-3214
Mariusz KepczynskiFaculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Kraków, Poland.ORCID 0000-0002-7304-6881
Tomasz RógDepartment of Physics, University of Helsinki, P.O. Box 64, FI-00014 Helsinki, Finland.ORCID 0000-0001-6765-7013
University of Helsinki · FIJagiellonian University · PLTampere University · FIUniversity of Eastern Finland · FIUniversity of Turku · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synaptic neurotransmission has recently been proposed to function via either a membrane-independent or a membrane-dependent mechanism, depending on the neurotransmitter type. In the membrane-dependent mechanism, amphipathic neurotransmitters first partition to the lipid headgroup region and then diffuse along the membrane plane to their membrane-buried receptors. However, to date, this mechanism has not been demonstrated for any neurotransmitter-receptor complex. Here, we combined isothermal calorimetry measurements with a diverse set of molecular dynamics simulation methods to investigate the partitioning of an amphipathic neurotransmitter (dopamine) and the mechanism of its entry into the ligand-binding site. Our results show that the binding of dopamine to its receptor is consistent with the membrane-dependent binding and entry mechanism. Both experimental and simulation results showed that dopamine favors binding to lipid membranes especially in the headgroup region. Moreover, our simulations revealed a ligand-entry pathway from the membrane to the binding site. This pathway passes through a lateral gate between transmembrane alpha-helices 5 and 6 on the membrane-facing side of the protein. All in all, our results demonstrate that dopamine binds to its receptor by a membrane-dependent mechanism, and this is complemented by the more traditional binding mechanism directly through the aqueous phase. The results suggest that the membrane-dependent mechanism is common in other synaptic receptors, too.

Indexed as

DopamineMolecular Dynamics SimulationBinding SitesCell MembraneLipid BilayersProtein BindingSynaptic TransmissionDopamineLipid Bilayersligand entry pathway predictionlipid membranemolecular dynamicsrandom acceleration molecular dynamicssynaptic neurotransmissionumbrella sampling

Identifiers

PMID32538079
PMCPMC7735663
OpenAlexW3035507210

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.