Evidence map›Paper›PMID 32536963›Full record

ArticlePlant methods2020

On the applicability of the Tubulin-Based Polymorphism (TBP) genotyping method: a comprehensive guide illustrated through the application on different genetic resources in the legume family.

Luca Braglia, Floriana Gavazzi, Laura Morello, Silvia Gianì, Peter Nick, Diego Breviario

Open access · goldAbstract read
In one paragraph

Article in Plant methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. A CombinatorialGenes · 2022
    Article
  4. New Insights into Interspecific Hybridization inPlants (Basel, Switzerland) · 2021
    Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Luca BragliaCNR- National Research Council, Institute of Agricultural Biology and Biotechnology-IBBA, Via Alfonso Corti 12, 20133 Milan, Italy.
Floriana GavazziCNR- National Research Council, Institute of Agricultural Biology and Biotechnology-IBBA, Via Alfonso Corti 12, 20133 Milan, Italy.
Laura MorelloCNR- National Research Council, Institute of Agricultural Biology and Biotechnology-IBBA, Via Alfonso Corti 12, 20133 Milan, Italy.
Silvia GianìCNR- National Research Council, Institute of Agricultural Biology and Biotechnology-IBBA, Via Alfonso Corti 12, 20133 Milan, Italy.
Peter NickDepartment of Molecular Cell Biology, Botanical Institute, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 4, 76131 Karlsruhe, Baden-Württemberg Germany.
Diego BreviarioCNR- National Research Council, Institute of Agricultural Biology and Biotechnology-IBBA, Via Alfonso Corti 12, 20133 Milan, Italy.ORCID 0000-0002-3062-7598
Institute of Agricultural Biology and Biotechnology · ITKarlsruhe Institute of Technology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPlant discrimination is of relevance for taxonomic, evolutionary, breeding and nutritional studies. To this purpose, evidence is reported to demonstrate TBP (Tubulin-Based-Polymorphism) as a DNA-based method suitable for assessing plant diversity.

resultsExploiting one of the most valuable features of TBP, that is the convenient and immediate application of the assay to groups of individuals that may belong to different taxa, we show that the TBP method can successfully discriminate different agricultural species and their crop wild relatives within the Papilionoideae subfamily. Detection of intraspecific variability is demonstrated by the genotyping of 27 different accessions of

conclusionsThese data illustrate TBP as a useful and versatile tool for plant genotyping. Since its potential has not yet been fully appreciated by the scientific community, we carefully report all the experimental details of a successful TBP protocol, while describing different applications, so that the method can be replicated in other laboratories.

Indexed as

GenotypingIntron Length PolymorphismLegumesTBP (Tubulin Based-Polymorphism)β-Tubulins

Identifiers

PMID32536963
PMCPMC7291473
OpenAlexW3034497901

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.