Evidence map›Paper›PMID 32534064›Full record

ArticleJournal of molecular biology2020

Local c-di-GMP Signaling in the Control of Synthesis of the E. coli Biofilm Exopolysaccharide pEtN-Cellulose.

Anja M Richter, Alexandra Possling, Nadezhda Malysheva, Kaveh P Yousef, Susanne Herbst, Max von Kleist, Regine Hengge

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 81 citations in OpenAlex.

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  5. bioRxiv : the preprint server for biology · 2026
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  17. Spatial propagation of temperate phages within and among biofilms.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Anja M RichterInstitute of Biology/Microbiology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany; Department of Materials and the Environment, Bundesanstalt für Materialforschung und -Prüfung, 12205 Berlin, Germany.
Alexandra PosslingInstitute of Biology/Microbiology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany.
Nadezhda MalyshevaDepartment of Mathematics and Computer Science, Freie Universität Berlin, 14195 Berlin, Germany; MF1 Bioinformatics, Robert-Koch-Institut, 13353 Berlin, Germany.
Kaveh P YousefDepartment of Mathematics and Computer Science, Freie Universität Berlin, 14195 Berlin, Germany.
Susanne HerbstInstitute of Biology/Microbiology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany.
Max von KleistDepartment of Mathematics and Computer Science, Freie Universität Berlin, 14195 Berlin, Germany; MF1 Bioinformatics, Robert-Koch-Institut, 13353 Berlin, Germany.
Regine HenggeInstitute of Biology/Microbiology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany. Electronic address: regine.hengge@hu-berlin.de.
Humboldt-Universität zu Berlin · DERobert Koch Institute · DEFreie Universität Berlin · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In many bacteria, the biofilm-promoting second messenger c-di-GMP is produced and degraded by multiple diguanylate cyclases (DGC) and phosphodiesterases (PDE), respectively. High target specificity of some of these enzymes has led to theoretical concepts of "local" c-di-GMP signaling. In Escherichia coli K-12, which has 12 DGCs and 13 PDEs, a single DGC, DgcC, is specifically required for the biosynthesis of the biofilm exopolysaccharide pEtN-cellulose without affecting the cellular c-di-GMP pool, but the mechanistic basis of this target specificity has remained obscure. DGC activity of membrane-associated DgcC, which is demonstrated in vitro in nanodiscs, is shown to be necessary and sufficient to specifically activate cellulose biosynthesis in vivo. DgcC and a particular PDE, PdeK (encoded right next to the cellulose operon), directly interact with cellulose synthase subunit BcsB and with each other, thus establishing physical proximity between cellulose synthase and a local source and sink of c-di-GMP. This arrangement provides a localized, yet open source of c-di-GMP right next to cellulose synthase subunit BcsA, which needs allosteric activation by c-di-GMP. Through mathematical modeling and simulation, we demonstrate that BcsA binding from the low cytosolic c-di-GMP pool in E. coli is negligible, whereas a single c-di-GMP molecule that is produced and released in direct proximity to cellulose synthase increases the probability of c-di-GMP binding to BcsA several hundred-fold. This local c-di-GMP signaling could provide a blueprint for target-specific second messenger signaling also in other bacteria where multiple second messenger producing and degrading enzymes exist.

Indexed as

BiofilmsCelluloseCyclic GMPEscherichia coli K12Escherichia coli ProteinsGlucosyltransferasesIntracellular Signaling Peptides and ProteinsPhosphoric Diester HydrolasesPhosphorus-Oxygen LyasesPolysaccharides, BacterialSignal TransductionbcsB protein, E colibis(3',5')-cyclic diguanylic acidCellulosecellulose synthaseCyclic GMPdiguanylate cyclaseEscherichia coli ProteinsGlucosyltransferasesIntracellular Signaling Peptides and ProteinsPhosphoric Diester HydrolasesPhosphorus-Oxygen LyasesPolysaccharides, Bacterialbacterial second messengercellulose synthasediguanylate cyclaseGGDEF domain

Identifiers

PMID32534064
PMCPMC7397504
OpenAlexW3035165646

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.