Evidence map›Paper›PMID 32533782›Full record

ArticleAngewandte Chemie (International ed. in English)2020

Dynamics of Ligand Binding to a Rigid Glycosidase*.

Fredj Ben Bdira, Christopher A Waudby, Alexander N Volkov, Sybrin P Schröder, Eiso Ab, Jeroen D C Codée, Hermen S Overkleeft, Johannes M F G Aerts, Hugo van Ingen, Marcellus Ubbink

Open access · hybridAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Dynamics of Ligand Binding to a Rigid Glycosidase*.Angewandte Chemie (International ed. in English) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Fredj Ben BdiraDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.ORCID 0000-0003-0205-4144
Christopher A WaudbyInstitute of Structural and Molecular Biology, University College London and Birkbeck College, London, WC1E 6BT, UK.ORCID 0000-0001-7810-3753
Alexander N VolkovVIB-VUB Center for Structural Biology, Pleinlaan 2, 1050, Brussels, Belgium.
Sybrin P SchröderDepartment of Bio-organic Synthesis, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.ORCID 0000-0002-7042-0911
Eiso AbZoBio BV, BioPartner 2 building, J.H. Oortweg 19, 2333 CH, Leiden, The Netherlands.ORCID 0000-0002-5758-0435
Jeroen D C CodéeDepartment of Bio-organic Synthesis, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.ORCID 0000-0003-3531-2138
Hermen S OverkleeftDepartment of Bio-organic Synthesis, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.ORCID 0000-0001-6976-7005
Johannes M F G AertsDepartment of Medical Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.ORCID 0000-0001-8168-2565
Hugo van IngenDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.ORCID 0000-0002-0808-3811
Marcellus UbbinkDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.ORCID 0000-0002-2615-6914
Leiden University · NLClinique Saint Jean · BEEuropean Organisation for Research and Treatment of Cancer · NLInstitute of Structural and Molecular Biology · GBLeiden University Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The single-domain GH11 glycosidase from Bacillus circulans (BCX) is involved in the degradation of hemicellulose, which is one of the most abundant renewable biomaterials in nature. We demonstrate that BCX in solution undergoes minimal structural changes during turnover. NMR spectroscopy results show that the rigid protein matrix provides a frame for fast substrate binding in multiple conformations, accompanied by slow conversion, which is attributed to an enzyme-induced substrate distortion. A model is proposed in which the rigid enzyme takes advantage of substrate flexibility to induce a conformation that facilitates the acyl formation step of the hydrolysis reaction.

Indexed as

Glycoside HydrolasesHydrolysisKineticsLigandsModels, MolecularProtein BindingGlycoside HydrolasesLigandsdynamicsglycosidasesligand bindingNMR spectroscopyrigid fold

Identifiers

PMID32533782
PMCPMC7693232
OpenAlexW3034513396

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.