Evidence map›Paper›PMID 32524198›Full record

ArticleEuropean journal of pediatrics2020

The utility of MALDI-TOF MS for outbreak investigation in the neonatal intensive care unit.

Maskit Bar-Meir, Elihay Berliner, Livnat Kashat, David A Zeevi, Marc V Assous

Open access · bronzeAbstract read
In one paragraph

Article in European journal of pediatrics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

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  10. Advances in automated techniques to identifyAsian biomedicine : research, reviews and news · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Maskit Bar-MeirInfectious Diseases, Shaare-Zedek Medical Center, Jerusalem, Israel. mbarmeir@gmail.com.ORCID http://orcid.org/0000-0003-1616-2111
Elihay BerlinerPediatrics, Shaare-Zedek Medical Center, Jerusalem, Israel.
Livnat KashatThe Microbiology Laboratory, Shaare-Zedek Medical Center, Jerusalem, Israel.
David A ZeeviMedical Genetics Institute - Shaare-Zedek Medical Center, Jerusalem, Israel.
Marc V AssousFaculty of Medicine, Hebrew University, Jerusalem, Israel.
Shaare Zedek Medical Center · ILHebrew University of Jerusalem · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our aim was to evaluate the performance of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), routinely used in the microbiology laboratory for bacterial identification, for bacterial typing in the setting of extended spectrum beta-lactamase producing Klebsiella pneumoniae (ESBL-KP) outbreak in the neonatal intensive care unit (NICU). Isolates from a 2011 outbreak in the NICU were retrieved from frozen stocks and analyzed by MALDI-TOF. The MALDI typing was compared with core genome multilocus sequence typing (cg-MLST). MALDI typing divided the 33 outbreak isolates into 2 clones: sequence type (ST)-290 and 405. These results were in complete agreement with cg-MLST results. The differentiation of the outbreak isolates into two clones correlated with the patients' location in the NICU, but also with their place of residence.Conclusion: Here, we show that MALDI-TOF MS, which has been integrated into the microbiology laboratory workflow for microbial species identification, can be secondarily used for epidemiological typing at no added cost. What is Known: • Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) is now routinely used in the microbiology laboratory for bacterial identification What is New: • MALDI typing was used for outbreak investigation in the NICU and divided the outbreak isolates into two clones • MALDI-TOF MS may be secondarily used for epidemiological typing at no added cost.

Indexed as

Intensive Care Units, NeonatalKlebsiella InfectionsKlebsiella pneumoniaeSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationDisease OutbreaksHumansInfant, NewbornMultilocus Sequence TypingESBL-producing K. pneumoniaeMALDI-TOFNeonatal intensive care unitOutbreakWhole-genome sequencing

Identifiers

PMID32524198
PMCPMC7283987
OpenAlexW3033031586

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.