Evidence map›Paper›PMID 32522891›Full record

ArticleMolecules and cells2020

Genome-Wide Analysis Identifies NURR1-Controlled Network of New Synapse Formation and Cell Cycle Arrest in Human Neural Stem Cells.

Soo Min Kim, Soo Young Cho, Min Woong Kim, Seung Ryul Roh, Hee Sun Shin, Young Ho Suh, Dongho Geum, Myung Ae Lee

Open access · greenAbstract read
In one paragraph

Article in Molecules and cells, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Transcriptional Regulation of the Synaptic Vesicle Protein Synaptogyrin-3 (International journal of molecular sciences · 2022
    Article
  5. Review
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Soo Min KimDepartment of Brain Science, Ajou University School of Medicine, Suwon 16499, Korea.ORCID https://orcid.org/0000-0003-2619-810X
Soo Young ChoNational Cancer Center, Goyang 10408, Korea.ORCID https://orcid.org/0000-0002-2960-9878
Min Woong KimDepartment of Brain Science, Ajou University School of Medicine, Suwon 16499, Korea.ORCID https://orcid.org/0000-0001-7263-6065
Seung Ryul RohDepartment of Brain Science, Ajou University School of Medicine, Suwon 16499, Korea.ORCID https://orcid.org/0000-0002-0762-0718
Hee Sun ShinDepartment of Brain Science, Ajou University School of Medicine, Suwon 16499, Korea.ORCID https://orcid.org/0000-0002-5021-1645
Young Ho SuhDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 03080, Korea.ORCID https://orcid.org/0000-0003-3979-1615
Dongho GeumDepartment of Medical Science, Korea University Medical School, Seoul 02841, Korea.ORCID https://orcid.org/0000-0001-9979-5699
Myung Ae LeeDepartment of Brain Science, Ajou University School of Medicine, Suwon 16499, Korea.ORCID https://orcid.org/0000-0003-3882-3531
Ajou University · KRNational Cancer Center · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nuclear receptor-related 1 (Nurr1) protein has been identified as an obligatory transcription factor in midbrain dopaminergic neurogenesis, but the global set of human NURR1 target genes remains unexplored. Here, we identified direct gene targets of NURR1 by analyzing genome-wide differential expression of NURR1 together with NURR1 consensus sites in three human neural stem cell (hNSC) lines. Microarray data were validated by quantitative PCR in hNSCs and mouse embryonic brains and through comparison to published human data, including genome-wide association study hits and the BioGPS gene expression atlas. Our analysis identified ~40 NURR1 direct target genes, many of them involved in essential protein modules such as synapse formation, neuronal cell migration during brain development, and cell cycle progression and DNA replication. Specifically, expression of genes related to synapse formation and neuronal cell migration correlated tightly with NURR1 expression, whereas cell cycle progression correlated negatively with it, precisely recapitulating midbrain dopaminergic development. Overall, this systematic examination of NURR1-controlled regulatory networks provides important insights into this protein's biological functions in dopamine-based neurogenesis.

Indexed as

Gene Regulatory NetworksGenome-Wide Association StudyAnimalsBase SequenceCell Cycle CheckpointsCell Cycle ProteinsCell DifferentiationCell LineCell LineageCell MovementGene OntologyHumansMesencephalonMiceNeural Stem CellsNeurogenesisCell Cycle ProteinsG0S2 protein, humanNR4A2 protein, humanNr4a2 protein, mouseNuclear Receptor Subfamily 4, Group A, Member 2dopaminergic neurogenesisgene expression profilinghuman neural stem cellNURR-1

Identifiers

PMID32522891
PMCPMC7332357
OpenAlexW3034095815

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.