Evidence map›Paper›PMID 32522850›Full record

ArticleJournal of virology2020

ORF4 of the Temperate Archaeal Virus SNJ1 Governs the Lysis-Lysogeny Switch and Superinfection Immunity.

Beibei Chen, Zhao Chen, Yuchen Wang, Han Gong, Linshan Sima, Jiao Wang, Shushan Ouyang, Wenqiang Gan, Mart Krupovic, Xiangdong Chen and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  3. Tat-dependent bundling pilus of a halophilic archaeon assembles by a strand donation mechanism and facilitates biofilm formation.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  8. Isolation and identification of a novel phage targeting clinical multidrug-resistantFrontiers in cellular and infection microbiology · 2024
    Article
  9. Article
  10. ICTV Virus Taxonomy Profile:The Journal of general virology · 2023
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Beibei ChenState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Zhao ChenState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Yuchen WangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Han GongState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Linshan SimaState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Jiao WangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Shushan OuyangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Wenqiang GanState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Mart KrupovicDepartment of Microbiology, Institut Pasteur, Paris, France.
Xiangdong ChenState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China xdchen@whu.edu.cn ssdu@whu.edu.cn.
Shishen DuState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China xdchen@whu.edu.cn ssdu@whu.edu.cn.
Wuhan University · CNInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent environmental and metagenomic studies have considerably increased the repertoire of archaeal viruses and suggested that they play important roles in nutrient cycling in the biosphere. However, very little is known about how they regulate their life cycles and interact with their hosts. Here, we report that the life cycle of the temperate haloarchaeal virus SNJ1 is controlled by the product ORF4, a small protein belonging to the antitoxin MazE superfamily. We show that ORF4 controls the lysis-lysogeny switch of SNJ1 and mediates superinfection immunity by repression of genomic DNA replication of the superinfecting viruses. Bioinformatic analysis shows that ORF4 is highly conserved in two SNJ1-like proviruses, suggesting that the mechanisms for lysis-lysogeny switch and superinfection immunity are conserved in this group of viruses. As the lysis-lysogeny switch and superinfection immunity of archaeal viruses have been poorly studied, we suggest that SNJ1 could serve as a model system to study these processes.

Indexed as

Archaeal VirusesBacteriophagesDNADNA VirusesHalobacteriaceaeImmediate-Early ProteinsLysogenyOpen Reading FramesProvirusesSuperinfectionDNAImmediate-Early ProteinsORF4 protein, Human herpesvirus 3Archaealysis-lysogeny switchSNJ1superinfection immunitytemperate virus

Identifiers

PMID32522850
PMCPMC7394903
OpenAlexW3033929089

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.