Evidence map›Paper›PMID 32522828›Full record

ArticleJournal of clinical microbiology2020

A Population-Specific Optimized GeneXpert Pooling Algorithm for Chlamydia trachomatis and Neisseria gonorrhoeae To Reduce Cost of Molecular Sexually Transmitted Infection Screening in Resource-Limited Settings.

Sarah Connolly, William Kilembe, Mubiana Inambao, Ana-Maria Visoiu, Tyronza Sharkey, Rachel Parker, Kristin M Wall, Amanda Tichacek, Eric Hunter, Susan Allen

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Sarah ConnollyEmory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, Georgia, USA sarah.connolly@emory.edu.ORCID 0000-0002-8788-4608
William KilembeZambia-Emory HIV Research Project, Lusaka, Zambia.
Mubiana InambaoZambia-Emory HIV Research Project, Lusaka, Zambia.
Ana-Maria VisoiuZambia-Emory HIV Research Project, Lusaka, Zambia.
Tyronza SharkeyZambia-Emory HIV Research Project, Lusaka, Zambia.
Rachel ParkerZambia-Emory HIV Research Project, Lusaka, Zambia.
Kristin M WallDepartment of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA.ORCID 0000-0001-8547-2004
Amanda TichacekZambia-Emory HIV Research Project, Lusaka, Zambia.
Eric HunterEmory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, Georgia, USA.ORCID 0000-0002-4273-8631
Susan AllenDepartment of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA.ORCID 0000-0002-9150-3898
Emory University · US

Funding

Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Ann M Chahroudi, Colleen F Kelley · 2002 to 2026
$74.0M
CTL and HIV Polymorphisms in Heterosexual TransmissionR01AI064060 · NIAID · EMORY UNIVERSITY · PI GOEPFERT, PAUL A., HUNTER, ERIC · 2005 to 2019
$21.7M
Virologic Correlates of Heterosexual TransmissionR01AI051231 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ALLEN, TODD M, HUNTER, ERIC · 2002 to 2022
$9.9M
Virologic Correlates of Heterosexual TransmissionR37AI051231 · NIAID · EMORY UNIVERSITY · PI HUNTER, ERIC · 2008 to 2017
$9.6M
EMORY AIDS INTERNATIONAL TRAINING AND RESEARCH PROGRAMD43TW001042 · FIC · EMORY UNIVERSITY · PI DEL RIO, CARLOS · 1998 to 2013
$6.8M
Couples HIV Counseling &Testing in two African capitalsR01MH066767 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ALLEN, SUSAN A · 2002 to 2006
$6.1M
Family Planning Promotion in HIV Infected ZambiansR01HD040125 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ALLEN, SUSAN A. · 2001 to 2005
$4.2M
HETEROSEXUAL TRANSMISSION AND THE NATURAL HISTORY OF HIVR01AI023980 · NIAID · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI ALLEN, SUSAN A. · 1988 to 1996
–
FIC NIH HHS D43 TW001042NIAID NIH HHS P30 AI050409NIAID NIH HHS R01 AI023980NIAID NIH HHS R01 AI051231NIAID NIH HHS R01 AI064060NIAID NIH HHS R37 AI051231NICHD NIH HHS R01 HD040125NIMH NIH HHS R01 MH066767Wellcome TrustWellcome Trust 107752/Z/15/Z
6 · The paper itself

Abstract

The sexually transmitted infections (STIs) chlamydia (CT) and gonorrhea (NG) are often asymptomatic in women and undetected by syndromic management, leading to complications such as pelvic inflammatory disease, infertility, and ectopic pregnancy. Molecular testing, such as the GeneXpert CT/NG assay, is highly sensitive, but cost restraints preclude implementation of these technologies in resource-limited settings. Pooled testing is one strategy to reduce the cost per sample, but the extent of savings depends on disease prevalence. The current study describes a pooling strategy based on identification of sociodemographic and laboratory factors associated with CT/NG prevalence in a high-risk cohort of Zambian female sex workers and single mothers conducted from 2016 to 2019. Factors associated with testing positive for CT/NG via logistic regression modeling included city, younger age, lower education, long-acting reversible contraception usage,

Indexed as

Chlamydia InfectionsGonorrheaSexually Transmitted DiseasesSex WorkersAlgorithmsChlamydia trachomatisFemaleHumansNeisseria gonorrhoeaePregnancyPrevalencealgorithmschlamydiadiagnosisglobal healthgonorrheasexually transmitted diseases

Identifiers

PMID32522828
PMCPMC7448664
OpenAlexW3033892407

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.