Evidence map›Paper›PMID 32520000›Full record

ArticleIEEE journal of translational engineering in health and medicine2016

The Utility of Cloud Computing in Analyzing GPU-Accelerated Deformable Image Registration of CT and CBCT Images in Head and Neck Cancer Radiation Therapy.

George Zaki, William Plishker, Wen Li, Junghoon Lee, Harry Quon, John Wong, Raj Shekhar

Abstract read
In one paragraph

Article in IEEE journal of translational engineering in health and medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

George ZakiIGI Technologies, Inc.College ParkMD20742USA.
William PlishkerIGI Technologies, Inc.College ParkMD20742USA.
Wen LiRadiology and Biomedical Imaging DepartmentUniversity of California at San FranciscoSan FranciscoCA94115USA.
Junghoon LeeDepartment of Radiation Oncology and Molecular Radiation SciencesThe Johns Hopkins School of MedicineThe Johns Hopkins UniversityBaltimoreMD21231USA.
Harry QuonDepartment of Radiation Oncology and Molecular Radiation SciencesThe Johns Hopkins School of MedicineThe Johns Hopkins UniversityBaltimoreMD21231USA.
John WongDepartment of Radiation Oncology and Molecular Radiation SciencesThe Johns Hopkins School of MedicineThe Johns Hopkins UniversityBaltimoreMD21231USA.
Raj ShekharIGI Technologies, Inc.College ParkMD20742USA.

Funding

Development of a low-cost hardware accelerator for 3D image registrationR42CA137886 · NCI · IGI TECHNOLOGIES, INC. · PI SHEKHAR, RAJ · 2011 to 2015
$2.2M
NCI NIH HHS R42 CA137886
6 · The paper itself

Abstract

The images generated during radiation oncology treatments provide a valuable resource to conduct analysis for personalized therapy, outcomes prediction, and treatment margin optimization. Deformable image registration (DIR) is an essential tool in analyzing these images. We are enhancing and examining DIR with the contributions of this paper: 1) implementing and investigating a cloud and graphic processing unit (GPU) accelerated DIR solution and 2) assessing the accuracy and flexibility of that solution on planning computed tomography (CT) with cone-beam CT (CBCT). Registering planning CTs and CBCTs aids in monitoring tumors, tracking body changes, and assuring that the treatment is executed as planned. This provides significant information not only on the level of a single patient, but also for an oncology department. However, traditional methods for DIR are usually time-consuming, and manual intervention is sometimes required even for a single registration. In this paper, we present a cloud-based solution in order to increase the data analysis throughput, so that treatment tracking results may be delivered at the time of care. We assess our solution in terms of accuracy and flexibility compared with a commercial tool registering CT with CBCT. The latency of a previously reported mutual information-based DIR algorithm was improved with GPUs for a single registration. This registration consists of rigid registration followed by volume subdivision-based nonrigid registration. In this paper, the throughput of the system was accelerated on the cloud for hundreds of data analysis pairs. Nine clinical cases of head and neck cancer patients were utilized to quantitatively evaluate the accuracy and throughput. Target registration error (TRE) and structural similarity index were utilized as evaluation metrics for registration accuracy. The total computation time consisting of preprocessing the data, running the registration, and analyzing the results was used to evaluate the system throughput. Evaluation showed that the average TRE for GPU-accelerated DIR for each of the nine patients was from 1.99 to 3.39 mm, which is lower than the voxel dimension. The total processing time for 282 pairs on an Amazon Web Services cloud consisting of 20 GPU enabled nodes took less than an hour. Beyond the original registration, the cloud resources also included automatic registration quality checks with minimal impact to timing. Clinical data were utilized in quantitative evaluations, and the results showed that the presented method holds great potential for many high-impact clinical applications in radiation oncology, including adaptive radio therapy, patient outcomes prediction, and treatment margin optimization.

Indexed as

Cloud computingcomputed tomographyimage registrationoncologyparallel programming

Identifiers

PMID32520000
PMCPMC6984195

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.