Evidence map›Paper›PMID 32518363›Full record

ArticleScientific reports2020

Bacterial community composition and potential pathogens along the Pinheiros River in the southeast of Brazil.

Rafaela Garrido Godoy, Marta Angela Marcondes, Rodrigo Pessôa, Andrezza Nascimento, Jefferson Russo Victor, Alberto José da Silva Duarte, Patricia Bianca Clissa, Sabri Saeed Sanabani

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Expansion of healthcare-associated hypervirulent KPC-2-producingOne health (Amsterdam, Netherlands) · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. The Prevalence ofPathogens (Basel, Switzerland) · 2022
    Review
  15. Article
  16. Article
  17. Insights of bacterial community structure and occurrence of antibiotic resistance and antimicrobial compounds in an urban stream in the megacity of São Paulo, Brazil.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rafaela Garrido Godoy *Laboratory of Dermatology and Immunodeficiency, São Paulo University Medical School, Sao Paulo, SP, Brazil.
Marta Angela Marcondes *Department of Microbiology, Fedral University of São Caetano, São Paulo, Brazil.
Rodrigo PessôaLaboratory of Dermatology and Immunodeficiency, São Paulo University Medical School, Sao Paulo, SP, Brazil.
Andrezza NascimentoLaboratory of Dermatology and Immunodeficiency, São Paulo University Medical School, Sao Paulo, SP, Brazil.
Jefferson Russo VictorLaboratory of Dermatology and Immunodeficiency, São Paulo University Medical School, Sao Paulo, SP, Brazil.
Alberto José da Silva DuarteLaboratory of Dermatology and Immunodeficiency, São Paulo University Medical School, Sao Paulo, SP, Brazil.
Patricia Bianca ClissaImmunopathology Laboratory, Butantan Institute, Sao Paulo, SP, Brazil.
Sabri Saeed SanabaniLaboratory of Medical Investigation LIM 03, Hospital das Clínicas (HCFMU), School of Medicine, University of São Paulo, São Paulo, Brazil. sabyem_63@yahoo.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Pinheiros River in São Paulo, Brazil, crosses through the capital city and has its confluence with the River Tiete, which comprises several reservoirs along its course. Although Pinheiros River is considered one of the heaviest polluted rivers in Brazil, little is known about its bacterial composition, their metabolic functions or how these communities are affected by the physicochemical parameters of the river. In this study, we used the 16S rRNA gene Illumina MiSeq sequencing to profile the bacterial community from the water surface at 11 points along the course of the River. Taxonomical composition revealed an abundance of Proteobacteria phyla, followed by Firmicutes and Bacteroidetes, with a total of 233 classified bacterial families and 558 known bacterial genera. Among the 35 potentially pathogenic bacteria identified, Arcobacter was the most predominant genus. The disrupted physicochemical parameters detected in this study may possibly contribute to the composition and distribution of the bacterial community in the Pinheiros River. Predictive functional analysis suggests the River is abundant in motility genes, including bacterial chemotaxis and flagellar assembly. These results provide novel and detailed insights into the bacterial communities and putative function of the surface water in the Pinheiros River.

Indexed as

BacteriaBiodiversityBrazilEnvironmental MonitoringRiversRNA, Ribosomal, 16SWater MicrobiologyRNA, Ribosomal, 16S

Identifiers

PMID32518363
PMCPMC7283273

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.