Evidence map›Paper›PMID 32518240›Full record

ArticleNature communications2020

Ribosome engineering reveals the importance of 5S rRNA autonomy for ribosome assembly.

Shijie Huang, Nikolay A Aleksashin, Anna B Loveland, Dorota Klepacki, Kaspar Reier, Amira Kefi, Teresa Szal, Jaanus Remme, Luc Jaeger, Nora Vázquez-Laslop and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. A novel tRNASer(AGY) 12244G > a variant impairs mitochondrial function and presents with classical MELAS phenotype.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
    Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Autonomous ribosome biogenesis in vitro.Nature communications · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. RNA Polymerases I and III in development and disease.Seminars in cell & developmental biology · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Shijie Huang *Center for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.ORCID http://orcid.org/0000-0003-0760-7246
Nikolay A Aleksashin *Center for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.ORCID http://orcid.org/0000-0002-3403-7587
Anna B Loveland *RNA Therapeutics Institute, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, 368 Plantation St., Worcester, MA, 01605, USA.ORCID http://orcid.org/0000-0001-9172-7747
Dorota KlepackiCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Kaspar ReierInstitute of Molecular and Cellular Biology, University of Tartu, Riia 23, 51010, Tartu, Estonia.
Amira KefiCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.ORCID http://orcid.org/0000-0001-6703-3796
Teresa SzalCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Jaanus RemmeInstitute of Molecular and Cellular Biology, University of Tartu, Riia 23, 51010, Tartu, Estonia.
Luc JaegerChemistry and Biochemistry Department, University of California, Santa Barbara, CA, 93106-9510, USA.ORCID http://orcid.org/0000-0001-9068-348X
Nora Vázquez-LaslopCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.ORCID http://orcid.org/0000-0003-2256-693X
Andrei A KorostelevRNA Therapeutics Institute, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, 368 Plantation St., Worcester, MA, 01605, USA. andrei.korostelev@umassmed.edu.ORCID http://orcid.org/0000-0003-1588-717X
Alexander S MankinCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA. shura@uic.edu.ORCID http://orcid.org/0000-0002-3301-827X
University of Illinois Chicago · USUniversity of Massachusetts Chan Medical School · USUniversity of Tartu · EEUniversity of California, Santa Barbara · US

Funding

Translational Control: Discovery and MechanismsR35GM127094 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Andrei Korostelev · 2018 to 2026
$5.5M
Advancing ribosome-targeting antibacterial peptides with a unique mechanism of actionR01AI162961 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALEXANDER S MANKIN, Terry William Moore · 2022 to 2026
$3.3M
Unraveling context specificity of translation by elucidating the mechanism of action of auxiliary translation factorsR35GM127134 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALEXANDER S MANKIN · 2018 to 2026
$3.2M
NIAID NIH HHS R01 AI162961NIGMS NIH HHS R35 GM127094NIGMS NIH HHS R35 GM127134
6 · The paper itself

Abstract

5S rRNA is an indispensable component of cytoplasmic ribosomes in all species. The functions of 5S rRNA and the reasons for its evolutionary preservation as an independent molecule remain unclear. Here we used ribosome engineering to investigate whether 5S rRNA autonomy is critical for ribosome function and cell survival. By linking circularly permutated 5S rRNA with 23S rRNA we generated a bacterial strain devoid of free 5S rRNA. Viability of the engineered cells demonstrates that autonomous 5S rRNA is dispensable for cell growth under standard conditions and is unlikely to have essential functions outside the ribosome. The fully assembled ribosomes carrying 23S-5S rRNA are highly active in translation. However, the engineered cells accumulate aberrant 50S subunits unable to form stable 70S ribosomes. Cryo-EM analysis revealed a malformed peptidyl transferase center in the misassembled 50S subunits. Our results argue that the autonomy of 5S rRNA is preserved due to its role in ribosome biogenesis.

Indexed as

Catalytic DomainCryoelectron MicroscopyDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsGene Expression RegulationGenetic EngineeringMutationNucleic Acid ConformationPeptidyl TransferasesRec A RecombinasesRibosomal ProteinsRibosomesRibosome Subunits, Large, BacterialRNA, BacterialRNA, Ribosomal, 23SDNA-Binding ProteinsEscherichia coli ProteinsPeptidyl TransferasesrecA protein, E coliRec A RecombinasesRibosomal ProteinsRNA, BacterialRNA, Ribosomal, 23SRNA, Ribosomal, 5S

Identifiers

PMID32518240
PMCPMC7283268
OpenAlexW3033600146

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.