ArticleThe Journal of biological chemistry2020
Open access · hybridAbstract read
In one paragraph
Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.
0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
49 citing papers in PubMed, 63 citations in OpenAlex.
- Corn Protein-Derived Bioactive Peptides Protect Gastric Epithelial Cells fromFoods (Basel, Switzerland) · 2026Article
- Intratumoral Microorganisms in Tumors: Current Understanding and Emerging Therapeutic Strategies.MedComm · 2026Review
- Integrating Human Intestinal Organoids into FDA's New Approach Methodologies for Drug Discovery.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Review
- The interplay of the microbiome, host genetics, and epigenetic modifications in gastric cancer.Frontiers in microbiology · 2026Review
- CANDiT: A machine learning framework for differentiation therapy in colorectal cancer.Cell reports. Medicine · 2025Article
- Low levels of DNA repair enzyme NEIL2 May exacerbate inflammation and genomic damage in subjects with stable COPD and during severe exacerbations.Respiratory research · 2025Article
- Characterization of moyamoya disease molecular subtypes through disulfidptosis‑related genes and immune landscape analysis.Experimental and therapeutic medicine · 2025Article
- DNA repair and disease: insights from the human DNA glycosylase NEIL family.Experimental & molecular medicine · 2025Review
- E-cigarettes increase the risk of adenoma formation in murine colorectal cancer model.Archives of toxicology · 2025Article
- High-altitude hypoxia exacerbates gastric mucosal damage and regulates the Nrf2 signaling pathway inFrontiers in physiology · 2025Article
- Research progress on the role of the NEIL family in cancer.Frontiers in cell and developmental biology · 2025Review
- Editorial: Infection-mediated inflammation that promotes cancer initiation and/or progression.Frontiers in medicine · 2025Article
- Assessment of the relationship between gut microbiota, inflammatory markers, and colorectal cancer.Frontiers in cellular and infection microbiology · 2025Article
- Elevated Levels of MUC and JADE1 Predict Poor Prognosis of Patients with Gastric Cancer.Cancer management and research · 2025Article
- A living organoid biobank of patients with Crohn's disease reveals molecular subtypes for personalized therapeutics.Cell reports. Medicine · 2024Article
- An Update onMicroorganisms · 2024Review
- E-cigarettes increase the risk of adenoma formation in murine colorectal cancer model.bioRxiv : the preprint server for biology · 2024Article
- The application of organoids in cancers associated with pathogenic infections.Clinical and experimental medicine · 2024Review
- Development of an Inflamed High Throughput Stem-cell-based Gut Epithelium Model to Assess the Impact of Annexin A1.Stem cell reviews and reports · 2024Article
- Gut Bacteria Provide Genetic and Molecular Reporter Systems to Identify Specific Diseases.International journal of molecular sciences · 2024Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
13 authors at 5 institutions in 1 country.
Ibrahim M SayedDepartment of Pathology, University of California San Diego, San Diego, California, USA.ORCID 0000-0001-8207-6401
Ayse Z SahanDepartment of Pathology, University of California San Diego, San Diego, California, USA.
Tatiana VenkovaDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, Texas, USA.
Anirban ChakrabortyDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, Texas, USA.ORCID 0000-0002-6558-0179
Dibyabrata MukhopadhyayDepartment of Pathology, University of California San Diego, San Diego, California, USA.
Diane BimczokDepartment of Microbiology and Immunology, Montana State University, Bozeman, Montana, USA.ORCID 0000-0002-8817-7243
Ellen J BeswickDepartment of Medicine, University of Utah, Salt Lake City, Utah, USA.
Victor E ReyesDepartment of Pediatrics, University of Texas Medical Branch, Galveston, Texas, USA.
Irina PinchukCollege of Medicine, Penn State Health Milton S. Hershey Medical Center, Hershey, Pennsylvania, USA.
Debashis SahooDepartment of Pediatrics, University of California San Diego, San Diego, California, USA.
Pradipta GhoshDepartment of Medicine and Cellular and Molecular Medicine, John and Rebecca Moore Cancer Center, University of California San Diego, San Diego, California, USA.ORCID 0000-0002-8917-3201
Tapas K HazraDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, Texas, USA sodas@ucsd.edu tkhazra@utmb.edu.ORCID 0000-0002-4587-687X
Soumita DasDepartment of Pathology, University of California San Diego, San Diego, California, USA sodas@ucsd.edu tkhazra@utmb.edu.ORCID 0000-0003-3895-3643
University of California San Diego · USThe University of Texas Medical Branch at Galveston · USMontana State University · USPenn State Milton S. Hershey Medical Center · USUniversity of Utah · US
Funding
Using the GoFlowChip to understand SARS-CoV-2 infection of the gastrointestinal mucosa of humans and batsU01EB029242 · NIBIB · MONTANA STATE UNIVERSITY - BOZEMAN · PI BIMCZOK, DIANE, WALK, SETH T · 2019 to 2023
$4.0MRole of Cytosolic DNA-multiprotein Interactome in Allergic Airway InflammationR01HL145477 · NHLBI · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K, SUR, SANJIV · 2019 to 2022
$3.6MPreferential single-strand break repair in the active genes of mammalian cellsR01NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2012 to 2021
$3.3MModulation of Macrophage Polarization by Heterotrimeric G proteins: Implications of Gastrointestinal InflammationR01AI141630 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Pradipta Ghosh · 2019 to 2026
$3.2MInnate responses following infection with enteric microbesR01DK107585 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAS, SOUMITA · 2016 to 2020
$2.2MSummer Student Research on the Application of Boolean AnalysisR01GM138385 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAHOO, DEBASHIS · 2020 to 2023
$2.0MG-CSF inhibition as a colorectal cancer therapyR01CA207051 · NCI · UNIVERSITY OF UTAH · PI BESWICK, ELLEN J. · 2016 to 2021
$1.7MNetwork-Based Novel Therapeutics in Colorectal CancersUG3TR002968 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAS, SOUMITA, GHOSH, PRADIPTA · 2019 to 2021
$946kEngulfment of enteric bacteria and the consequences for intestinal inflammationR56DK099275 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAS, SOUMITA · 2014 to 2014
$221kHarnessing human gastric organoids to investigate the role of CD103 in gastric dendritic cell – epithelial cell crosstalkR03DK107960 · NIDDK · MONTANA STATE UNIVERSITY - BOZEMAN · PI BIMCZOK, DIANE · 2015 to 2016
$144kNCATS NIH HHS UG3 TR002968NCI NIH HHS R01 CA207051NHLBI NIH HHS R01 HL145477NIAID NIH HHS R01 AI141630NIBIB NIH HHS U01 EB029242NIDDK NIH HHS R01 DK107585NIDDK NIH HHS R03 DK107960NIDDK NIH HHS R56 DK099275NIGMS NIH HHS R01 GM138385NINDS NIH HHS R01 NS073976
Abstract
Infection with the Gram-negative, microaerophilic bacterium
Indexed as
Down-RegulationGenomeAnimalsAntigens, BacterialBacterial ProteinsDisease ProgressionDNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesGastric MucosaHelicobacter InfectionsHelicobacter pyloriHumansInflammationMiceRNA, MessengerAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriDNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesNEIL2 protein, humanRNA, Messengerbacterial infectionbase excision repaircytokine responseDNA damageDNA repairenteroidsgastric cancergastric organoidHelicobacter pyloriinfectioninflammationNei-like DNA glycosylaseNei-like DNA glycosylase 2 (NEIL2)oxidative stressstem cells
Identifiers
What OpenQuestion holds
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Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.