Evidence map›Paper›PMID 32517343›Full record

ArticleGenes2020

High-Throughput Genotyping of Resilient Tomato Landraces to Detect Candidate Genes Involved in the Response to High Temperatures.

Fabrizio Olivieri, Roberta Calafiore, Silvana Francesca, Carlo Schettini, Pasquale Chiaiese, Maria Manuela Rigano, Amalia Barone

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Comprehensive Genome-Wide Analysis and Expression Pattern Profiling of theInternational journal of molecular sciences · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Fabrizio OlivieriDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055 Napoli, Italy.ORCID 0000-0002-5346-4170
Roberta CalafioreDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055 Napoli, Italy.
Silvana FrancescaDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055 Napoli, Italy.
Carlo SchettiniALMA SEGES Soc. Coop., Eboli, 84025 Salerno, Italy.
Pasquale ChiaieseDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055 Napoli, Italy.ORCID 0000-0002-4259-4025
Maria Manuela RiganoDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055 Napoli, Italy.ORCID 0000-0001-7826-9067
Amalia BaroneDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055 Napoli, Italy.ORCID 0000-0002-5555-1999
University of Naples Federico II · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The selection of tolerant varieties is a powerful strategy to ensure highly stable yield under elevated temperatures. In this paper, we report the phenotypic and genotypic characterization of 10 tomato landraces to identify the best performing under high temperatures. The phenotyping of five yield-related traits allowed us to select one genotype that exhibits highly stable yield performances in different environmental conditions. Moreover, a Genotyping-by-Sequencing approach allowed us to explore the genetic variability of the tested genotypes. The high and stable yielding landrace E42 was the most polymorphic one, with ~49% and ~47% private SNPs and InDels, respectively. The effect of 26,113 mutations on proteins' structure was investigated and it was discovered that 37 had a high impact on the structure of 34 proteins of which some are putatively involved in responses to high temperatures. Additionally, 129 polymorphic sequences aligned against tomato wild species genomes revealed the presence in the genotype E42 of several introgressed regions deriving from

Indexed as

Genotyping TechniquesHigh-Throughput Screening AssaysChromosome MappingFruitGenetic Association StudiesGenotypeHot TemperaturePolymorphism, Single NucleotideQuantitative Trait LociSolanum lycopersicumThermotolerancegenotyping-by-sequencingheat tolerancetomato landraceswild-speciesyield-related traits

Identifiers

PMID32517343
PMCPMC7349060
OpenAlexW3033587237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.