Evidence map›Paper›PMID 32516596›Full record

ArticleDevelopmental cell2020

Folding Keratin Gene Clusters during Skin Regional Specification.

Ya-Chen Liang, Ping Wu, Gee-Way Lin, Chih-Kuan Chen, Chao-Yuan Yeh, Stephanie Tsai, Jie Yan, Ting-Xin Jiang, Yung-Chih Lai, David Huang and 5 more

Open access · greenAbstract read
In one paragraph

Article in Developmental cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  12. Review
  13. Regional specific differentiation of integumentary organs: SATB2 is involved in α- and β-keratin gene cluster switching in the chicken.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  14. Article
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  18. Review
  19. Skin epigenetics.Experimental dermatology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Ya-Chen LiangDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA; Integrative Stem Cell Center, China Medical University and Hospital, China Medical University, Taichung 404, Taiwan.
Ping WuDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Gee-Way LinDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA; Department of Biochemistry and Molecular Cell Biology, School of Medicine, College of Medicine, Taipei Medical University, Taipei 110, Taiwan.
Chih-Kuan ChenDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA; The IEGG and Animal Biotechnology Center, National Chung Hsing University, Taichung 402, Taiwan.
Chao-Yuan YehDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Stephanie TsaiDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA; Ostrow School of Dentistry, University of Southern California, Los Angeles, CA 90089, USA; Graduate School of Clinical Dentistry, National Taiwan University, Taipei 100, Taiwan.
Jie YanJiangsu Key Laboratory for Biodiversity & Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China.
Ting-Xin JiangDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Yung-Chih LaiDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA; Integrative Stem Cell Center, China Medical University and Hospital, China Medical University, Taichung 404, Taiwan.
David HuangDepartment of Stem Cell Biology and Regenerative Medicine, Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Mingyang CaiDepartment of Stem Cell Biology and Regenerative Medicine, Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Raina ChoiDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Randall B WidelitzDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Wange LuDepartment of Stem Cell Biology and Regenerative Medicine, Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Cheng-Ming ChuongDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA. Electronic address: cmchuong@usc.edu.
University of Southern California · USBroad Center · USChina Medical University · TWNanjing Normal University · CNNational Taiwan University · TW

Funding

USC RESEARCH CENTER FOR LIVER DISEASES: PILOT PROGRAMSP30DK048522 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAPLOWITZ, NEIL · 1995 to 2020
$21.8M
Size regulation of skin appendagesR01AR047364 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Cheng-Ming Chuong · 2002 to 2026
$10.1M
DOCTORAL AND POST-DOCTORAL TRAINING IN CRANIOFACIAL BIOLOGYT90DE021982 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI PAINE, MICHAEL LANSDELL · 2011 to 2025
$6.2M
Tissue Engineering of New Hair FormationR01AR060306 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHUONG, CHENG-MING · 2010 to 2019
$4.6M
Tissue Patterning in living skin and organ explantsR37AR060306 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Cheng-Ming Chuong · 2020 to 2026
$3.6M
Tissue mechanics in regenerative wound healing of the skinR01GM125322 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHUONG, CHENG-MING · 2018 to 2021
$1.3M
NIAMS NIH HHS R01 AR047364NIAMS NIH HHS R01 AR060306NIAMS NIH HHS R37 AR060306NIDCR NIH HHS T90 DE021982NIDDK NIH HHS P30 DK048522NIGMS NIH HHS R01 GM125322
6 · The paper itself

Abstract

Regional specification is critical for skin development, regeneration, and evolution. The contribution of epigenetics in this process remains unknown. Here, using avian epidermis, we find two major strategies regulate β-keratin gene clusters. (1) Over the body, macro-regional specificities (scales, feathers, claws, etc.) established by typical enhancers control five subclusters located within the epidermal differentiation complex on chromosome 25; (2) within a feather, micro-regional specificities are orchestrated by temporospatial chromatin looping of the feather β-keratin gene cluster on chromosome 27. Analyses suggest a three-factor model for regional specification: competence factors (e.g., AP1) make chromatin accessible, regional specifiers (e.g., Zic1) target specific genome regions, and chromatin regulators (e.g., CTCF and SATBs) establish looping configurations. Gene perturbations disrupt morphogenesis and histo-differentiation. This chicken skin paradigm advances our understanding of how regulation of big gene clusters can set up a two-dimensional body surface map.

Indexed as

Chromatin Assembly and DisassemblyMorphogenesisAnimalsAvian Proteinsbeta-KeratinsCCCTC-Binding FactorCell DifferentiationChick EmbryoChromosomesEpithelial CellsFeathersGene Expression Regulation, DevelopmentalKruppel-Like Factor 4Kruppel-Like Transcription FactorsMultigene FamilyAvian Proteinsbeta-KeratinsCCCTC-Binding FactorKruppel-Like Factor 4Kruppel-Like Transcription Factorsbeta-keratinchromatin loopingCTCFdevelopmentenhancersepigeneticsevolutionfeatherhigher-orderKLF4SATB2scale

Identifiers

PMID32516596
PMCPMC7386462
OpenAlexW3033173757

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.