Evidence map›Paper›PMID 32515440›Full record

ArticleChemical communications (Cambridge, England)2020

Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis: crystal structure of a C-glycoside synthase/PRPP complex.

Sisi Gao, Ashish Radadiya, Wenbo Li, Huanting Liu, Wen Zhu, Valérie de Crécy-Lagard, Nigel G J Richards, James H Naismith

Abstract read
In one paragraph

Article in Chemical communications (Cambridge, England), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Reactivity and mechanism in chemical and synthetic biology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sisi GaoResearch Complex at Harwell, Didcot, OX11 0FA, UK and BSRC, University of St Andrews, St Andrews, KY16 9ST, UK.ORCID http://orcid.org/0000-0002-6124-6018
Ashish RadadiyaSchool of Chemistry, Cardiff University, Cardiff, CF10 3AT, UK.ORCID http://orcid.org/0000-0001-7348-1755
Wenbo LiDivision of Structural Biology, University of Oxford, Oxford, OX3 7BN, UK. naismith@strubi.ox.ac.uk.
Huanting LiuBSRC, University of St Andrews, St Andrews, KY16 9ST, UK.
Wen ZhuDepartment of Chemistry and California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94720, USA.ORCID http://orcid.org/0000-0003-3190-0071
Valérie de Crécy-LagardDepartment of Microbiology, University of Florida, Gainesville, FL 32611, USA.ORCID http://orcid.org/0000-0002-9955-3785
Nigel G J RichardsSchool of Chemistry, Cardiff University, Cardiff, CF10 3AT, UK and Foundation for Applied Molecular Evolution, Alachua, FL 32615, USA.ORCID http://orcid.org/0000-0002-0375-0881
James H NaismithDivision of Structural Biology, University of Oxford, Oxford, OX3 7BN, UK. naismith@strubi.ox.ac.uk and The Rosalind Franklin Institute, Didcot, OX11 0FA, UK.ORCID http://orcid.org/0000-0001-6744-5061

Funding

Pyridoxal 5'-phosphate homeostasis in Escherichia coliR01GM129793 · NIGMS · UNIVERSITY OF FLORIDA · PI DE CRECY-LAGARD, VALERIE A · 2019 to 2022
$1.2M
NIGMS NIH HHS R01 GM129793
6 · The paper itself

Abstract

The enzyme ForT catalyzes C-C bond formation between 5'-phosphoribosyl-1'-pyrophosphate (PRPP) and 4-amino-1H-pyrazole-3,5-dicarboxylate to make a key intermediate in the biosynthesis of formycin A 5'-phosphate by Streptomyces kaniharaensis. We report the 2.5 Å resolution structure of the ForT/PRPP complex and locate active site residues critical for PRPP recognition and catalysis.

Indexed as

Bacterial ProteinsBiocatalysisCarbon-Carbon LigasesCatalytic DomainCrystallography, X-RayModels, ChemicalPhosphoribosyl PyrophosphateProtein BindingStreptomycesBacterial ProteinsCarbon-Carbon LigasesPhosphoribosyl Pyrophosphate

Identifiers

PMID32515440
PMCPMC8183095

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.