Evidence map›Paper›PMID 32514710›Full record

ArticleClinical and experimental medicine2020

Six long noncoding RNAs as potentially biomarkers involved in competitive endogenous RNA of hepatocellular carcinoma.

Lili Qu, Xiaoxiao Cai, Junwen Xu, Xiaowei Wei, Xiaojun Qu, Li Sun, Lailing Gong, Chuan Su, Yefei Zhu

Abstract read
PubMed Publisher
In one paragraph

Article in Clinical and experimental medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Circulating prostaglandin EClinical and experimental medicine · 2021
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lili QuLaboratory Medicine Center, The Second Affiliated Hospital, Nanjing Medical University, Nanjing, 210011, People's Republic of China.
Xiaoxiao CaiLaboratory Medicine Center, The Second Affiliated Hospital, Nanjing Medical University, Nanjing, 210011, People's Republic of China.
Junwen XuLaboratory Medicine Center, The Second Affiliated Hospital, Nanjing Medical University, Nanjing, 210011, People's Republic of China.
Xiaowei WeiLaboratory Medicine Center, The Second Affiliated Hospital, Nanjing Medical University, Nanjing, 210011, People's Republic of China.
Xiaojun QuLaboratory Medicine Center, The Second Affiliated Hospital, Nanjing Medical University, Nanjing, 210011, People's Republic of China.
Li SunLaboratory Medicine Center, The Second Affiliated Hospital, Nanjing Medical University, Nanjing, 210011, People's Republic of China.
Lailing GongLaboratory Medicine Center, The Second Affiliated Hospital, Nanjing Medical University, Nanjing, 210011, People's Republic of China.
Chuan SuState Key Lab of Reproductive Medicine, Jiangsu Key Laboratory of Pathogen Biology, Department of Pathogen Biology and Immunology, Center for Global Health, Nanjing Medical University, Nanjing, 211166, People's Republic of China. chuansu@njmu.edu.cn.
Yefei ZhuLaboratory Medicine Center, The Second Affiliated Hospital, Nanjing Medical University, Nanjing, 210011, People's Republic of China. zhuyf@njmu.edu.cn.ORCID http://orcid.org/0000-0002-2625-2199
Second Affiliated Hospital of Nanjing Medical University · CNNanjing Medical University · CN

Funding

Jiangsu Provincial "333 project" Fund for High-level Talent Cultivation BRA2018086the Science and Technology Development Foundation of Nanjing Medical University of China 2016NJMUZD034
6 · The paper itself

Abstract

To investigate lncRNAs acting as competing endogenous RNAs (ceRNAs) involved in oncogenesis and progression of HCC. Different expressed lncRNAs, microRNAs, and mRNAs (DElncRNAs, DEmiRNAs, DEmRNAs), downloaded from The Cancer Genome Atlas (TCGA) database, were identified by edgeR package. CeRNA network was constructed based on miRcode, TargetScan, and miRTarBase. Target DEmRNAs were annotated by KEGG pathway and GO analysis. Negatively correlated lncRNA-miRNA pairs were analyzed by Pearson correlation coefficient, simultaneously, overall survival (OS) were evaluated. The expression of these lncRNAs were examined in HCC cell lines and tissues through qRT-PCR. 1070 DElncRNAs, 147 DEmiRNAs and 1993 DEmRNAs were acquired. CeRNA network was successfully established, including 27 lncRNAs, 5 miRNAs, and 30 mRNAs significantly correlated with OS. The DEmRNAs were significantly enriched in "Cell Cycle" and "pathways in cancer". Six lncRNAs and 2 miRNAs were negatively correlated. These lncRNAs were validated by qRT-PCR. These observations will provide a novel perspective to elucidate HCC pathogenesis.

Indexed as

Biomarkers, TumorCarcinoma, HepatocellularCell Line, TumorDatabases, GeneticDisease ProgressionGene Expression Regulation, NeoplasticGene Regulatory NetworksHep G2 CellsHumansLiver NeoplasmsMicroRNAsNeoplasm GradingPrognosisRNA, Long NoncodingSurvival AnalysisBiomarkers, TumorMicroRNAsRNA, Long NoncodingBiomarkersceRNAsHepatocellular carcinomalncRNAs

Identifiers

PMID32514710
OpenAlexW3033739403

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.