Evidence map›Paper›PMID 32514074›Full record

ArticleNature microbiology2020

Spatiotemporal proteomics uncovers cathepsin-dependent macrophage cell death during Salmonella infection.

Joel Selkrig, Nan Li, Annika Hausmann, Matthew S J Mangan, Matylda Zietek, André Mateus, Jacob Bobonis, Anna Sueki, Haruna Imamura, Bachir El Debs and 11 more

Open access · hybridAbstract read
In one paragraph

Article in Nature microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 44 citations in OpenAlex.

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  10. Visualisation of Host-Pathogen Communication.Advances in experimental medicine and biology · 2023
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  20. Host metabolic shift during systemicEmerging microbes & infections · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 7 countries.

Joel SelkrigEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.
Nan LiEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.
Annika HausmannInstitute of Microbiology, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-8852-3444
Matthew S J ManganInstitute of Innate Immunity, University of Bonn, Bonn, Germany.
Matylda ZietekEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.
André MateusEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-6870-0677
Jacob BobonisEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-9293-9733
Anna SuekiEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.
Haruna ImamuraEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Cambridge, UK.
Bachir El DebsEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.
Gianluca SigismondoGerman Cancer Research Center, Heidelberg, Germany.
Bogdan I FloreaDepartment of Bio-organic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Herman S OverkleeftDepartment of Bio-organic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Nataša Kopitar-JeralaDepartment of Biochemistry, Molecular and Structural Biology, Jožef Stefan Institute, Ljubljana, Slovenia.ORCID http://orcid.org/0000-0003-1381-070X
Boris TurkDepartment of Biochemistry, Molecular and Structural Biology, Jožef Stefan Institute, Ljubljana, Slovenia.
Pedro BeltraoEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Cambridge, UK.
Mikhail M SavitskiEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-2011-9247
Eicke LatzInstitute of Innate Immunity, University of Bonn, Bonn, Germany.
Wolf-Dietrich HardtInstitute of Microbiology, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-9892-6420
Jeroen KrijgsveldGerman Cancer Research Center, Heidelberg, Germany. j.krijgsveld@dkfz.de.ORCID http://orcid.org/0000-0001-7549-9326
Athanasios TypasEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany. typas@embl.de.ORCID http://orcid.org/0000-0002-0797-9018
European Molecular Biology Laboratory · DEGerman Cancer Research Center · DEETH Zurich · CHEuropean Bioinformatics Institute · GBHeidelberg University · DELeiden University · NLUniversity of Bonn · DEJožef Stefan Institute · SIUniversity of Ljubljana · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The interplay between host and pathogen relies heavily on rapid protein synthesis and accurate protein targeting to ensure pathogen destruction. To gain insight into this dynamic interface, we combined Click chemistry with pulsed stable isotope labelling of amino acids in cell culture to quantify the host proteome response during macrophage infection with the intracellular bacterial pathogen Salmonella enterica Typhimurium. We monitored newly synthesized proteins across different host cell compartments and infection stages. Within this rich resource, we detected aberrant trafficking of lysosomal proteases to the extracellular space and the nucleus. We verified that active cathepsins re-traffic to the nucleus and that these are linked to cell death. Pharmacological cathepsin inhibition and nuclear targeting of a cellular cathepsin inhibitor (stefin B) suppressed S. enterica Typhimurium-induced cell death. We demonstrate that cathepsin activity is required for pyroptotic cell death via the non-canonical inflammasome, and that lipopolysaccharide transfection into the host cytoplasm is sufficient to trigger active cathepsin accumulation in the host nucleus and cathepsin-dependent cell death. Finally, cathepsin inhibition reduced gasdermin D expression, thus revealing an unexpected role for cathepsin activity in non-canonical inflammasome regulation. Overall, our study illustrates how resolution of host proteome dynamics during infection can drive the discovery of biological mechanisms at the host-microbe interface.

Indexed as

ProteomicsAnimalsCathepsinsCell DeathCystatin BGasderminsInflammasomesIntracellular Signaling Peptides and ProteinsLipopolysaccharidesLysosomesMacrophagesMicePeptide HydrolasesPhosphate-Binding ProteinsProteomeRAW 264.7 CellsCathepsinsCystatin BGasderminsGsdmd protein, mouseInflammasomesIntracellular Signaling Peptides and ProteinsLipopolysaccharidesPeptide HydrolasesPhosphate-Binding ProteinsProteome

Identifiers

PMID32514074
PMCPMC7610801
OpenAlexW3033516453

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.