Evidence map›Paper›PMID 32514036›Full record

ArticleNature communications2020

Adaptive reduction of male gamete number in the selfing plant Arabidopsis thaliana.

Takashi Tsuchimatsu, Hiroyuki Kakui, Misako Yamazaki, Cindy Marona, Hiroki Tsutsui, Afif Hedhly, Dazhe Meng, Yutaka Sato, Thomas Städler, Ueli Grossniklaus and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
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  13. Speciation and adaptation research meets genome editing.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  14. The selfing syndrome and beyond: diverse evolutionary consequences of mating system transitions in plants.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  15. Review
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Takashi Tsuchimatsu *Department of Evolutionary Biology and Environmental Studies & Zurich-Basel Plant Science Center, University of Zurich, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-1241-9338
Hiroyuki Kakui *Department of Evolutionary Biology and Environmental Studies & Zurich-Basel Plant Science Center, University of Zurich, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-6016-9690
Misako YamazakiDepartment of Evolutionary Biology and Environmental Studies & Zurich-Basel Plant Science Center, University of Zurich, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-0989-2944
Cindy MaronaInstitute for Biochemistry and Biology, University of Potsdam, 14476, Potsdam, Germany.
Hiroki TsutsuiDepartment of Plant and Microbial Biology & Zurich-Basel Plant Science Center, University of Zurich, 8008, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-5710-3367
Afif HedhlyDepartment of Plant and Microbial Biology & Zurich-Basel Plant Science Center, University of Zurich, 8008, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-4761-3731
Dazhe MengGregor Mendel Institute, Austrian Academy of Sciences, Vienna BioCenter, A-1030, Vienna, Austria.
Yutaka SatoDepartment of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.
Thomas StädlerInstitute of Integrative Biology, ETH Zurich, 8092, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-4513-8583
Ueli GrossniklausDepartment of Plant and Microbial Biology & Zurich-Basel Plant Science Center, University of Zurich, 8008, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-0522-8974
Masahiro M KanaokaGraduate School of Science, Nagoya University, Nagoya, 464-8602, Japan.
Michael LenhardInstitute for Biochemistry and Biology, University of Potsdam, 14476, Potsdam, Germany.
Magnus NordborgGregor Mendel Institute, Austrian Academy of Sciences, Vienna BioCenter, A-1030, Vienna, Austria.ORCID http://orcid.org/0000-0001-7178-9748
Kentaro K ShimizuDepartment of Evolutionary Biology and Environmental Studies & Zurich-Basel Plant Science Center, University of Zurich, 8057, Zurich, Switzerland. kentaro.shimizu@ieu.uzh.ch.ORCID http://orcid.org/0000-0002-6483-1781

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The number of male gametes is critical for reproductive success and varies between and within species. The evolutionary reduction of the number of pollen grains encompassing the male gametes is widespread in selfing plants. Here, we employ genome-wide association study (GWAS) to identify underlying loci and to assess the molecular signatures of selection on pollen number-associated loci in the predominantly selfing plant Arabidopsis thaliana. Regions of strong association with pollen number are enriched for signatures of selection, indicating polygenic selection. We isolate the gene REDUCED POLLEN NUMBER1 (RDP1) at the locus with the strongest association. We validate its effect using a quantitative complementation test with CRISPR/Cas9-generated null mutants in nonstandard wild accessions. In contrast to pleiotropic null mutants, only pollen numbers are significantly affected by natural allelic variants. These data support theoretical predictions that reduced investment in male gametes is advantageous in predominantly selfing species.

Indexed as

Adaptation, PhysiologicalArabidopsisBase SequenceCRISPR-Cas SystemsEvolution, MolecularGenes, PlantMutationPlants, Genetically ModifiedPollenReproductionSequence Homology, Nucleic Acid

Identifiers

PMID32514036
PMCPMC7280297

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.