Evidence map›Paper›PMID 32513971›Full record

ArticleNature communications2020

NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis.

Yafei Wang, Zhenhui Zhong, Yaxin Zhang, Linhao Xu, Suhua Feng, Shima Rayatpisheh, James A Wohlschlegel, Zonghua Wang, Steven E Jacobsen, Israel Ausin

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Epigenetics in the modern era of crop improvements.Science China. Life sciences · 2025
    Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. The Histone Chaperone Network Is Highly Conserved inInternational journal of molecular sciences · 2023
    Article
  9. Review
  10. Article
  11. Genome-Wide Identification of NAP1 and Function Analysis in Moso Bamboo (International journal of molecular sciences · 2022
    Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Salinity Effects on Guard Cell Proteome inInternational journal of molecular sciences · 2021
    Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Yafei Wang *State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, China.ORCID http://orcid.org/0000-0002-3450-7307
Zhenhui Zhong *Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0002-8438-0375
Yaxin ZhangHaixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Linhao XuLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Stadt Seeland, 06466, Germany.ORCID http://orcid.org/0000-0001-9108-8631
Suhua FengDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA.
Shima RayatpishehDepartment of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0003-3388-5776
James A WohlschlegelDepartment of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA.
Zonghua WangState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Steven E JacobsenDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA. jacobsen@ucla.edu.ORCID http://orcid.org/0000-0001-9483-138X
Israel AusinState Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, China. israel.ausin@gmail.com.ORCID http://orcid.org/0000-0002-3707-1780
University of California, Los Angeles · USFujian Agriculture and Forestry University · CNHoward Hughes Medical Institute · USLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DENorthwest A&F University · CNNorth West Agriculture and Forestry University · CN

Funding

Proteolytic Control of Iron Metabolism by the Ubiquitin Ligase FBXL5R01GM089778 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOHLSCHLEGEL, JAMES AKIRA · 2010 to 2023
$4.0M
Epigenetic gene regulation in ArabidopsisR35GM130272 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JACOBSEN, STEVEN E · 2019 to 2023
$1.6M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM089778NIGMS NIH HHS R35 GM130272
6 · The paper itself

Abstract

In eukaryotes, DNA wraps around histones to form nucleosomes, which are compacted into chromatin. DNA-templated processes, including transcription, require chromatin disassembly and reassembly mediated by histone chaperones. Additionally, distinct histone variants can replace core histones to regulate chromatin structure and function. Although replacement of H2A with the evolutionarily conserved H2A.Z via the SWR1 histone chaperone complex has been extensively studied, in plants little is known about how a reduction of H2A.Z levels can be achieved. Here, we show that NRP proteins cause a decrease of H2A.Z-containing nucleosomes in Arabidopsis under standard growing conditions. nrp1-1 nrp2-2 double mutants show an over-accumulation of H2A.Z genome-wide, especially at heterochromatic regions normally H2A.Z-depleted in wild-type plants. Our work suggests that NRP proteins regulate gene expression by counteracting SWR1, thereby preventing excessive accumulation of H2A.Z.

Indexed as

Adenosine TriphosphatasesArabidopsisArabidopsis ProteinsChromatinChromatin Assembly and DisassemblyGene Expression Regulation, PlantGenome, PlantHistonesMolecular ChaperonesMutationNucleosomesWhole Genome SequencingABCI8 protein, ArabidopsisAdenosine TriphosphatasesArabidopsis ProteinsAT1G52740 protein, ArabidopsisChromatinHistonesMolecular ChaperonesNRP2 protein, ArabidopsisNucleosomes

Identifiers

PMID32513971
PMCPMC7280298
OpenAlexW3034001978

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.