Evidence map›Paper›PMID 32513960›Full record

ArticleScientific reports2020

Chromosomal toxin-antitoxin systems in Pseudomonas putida are rather selfish than beneficial.

Sirli Rosendahl, Hedvig Tamman, Age Brauer, Maido Remm, Rita Hõrak

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

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  19. International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sirli RosendahlInstitute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Hedvig TammanInstitute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Age BrauerInstitute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Maido RemmInstitute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Rita HõrakInstitute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia. rita.horak@ut.ee.
University of Tartu · EE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromosomal toxin-antitoxin (TA) systems are widespread genetic elements among bacteria, yet, despite extensive studies in the last decade, their biological importance remains ambivalent. The ability of TA-encoded toxins to affect stress tolerance when overexpressed supports the hypothesis of TA systems being associated with stress adaptation. However, the deletion of TA genes has usually no effects on stress tolerance, supporting the selfish elements hypothesis. Here, we aimed to evaluate the cost and benefits of chromosomal TA systems to Pseudomonas putida. We show that multiple TA systems do not confer fitness benefits to this bacterium as deletion of 13 TA loci does not influence stress tolerance, persistence or biofilm formation. Our results instead show that TA loci are costly and decrease the competitive fitness of P. putida. Still, the cost of multiple TA systems is low and detectable in certain conditions only. Construction of antitoxin deletion strains showed that only five TA systems code for toxic proteins, while other TA loci have evolved towards reduced toxicity and encode non-toxic or moderately potent proteins. Analysis of P. putida TA systems' homologs among fully sequenced Pseudomonads suggests that the TA loci have been subjected to purifying selection and that TA systems spread among bacteria by horizontal gene transfer.

Indexed as

Anti-Bacterial AgentsAntitoxinsBacterial ProteinsBacterial ToxinsBiofilmsDatabases, FactualDrug Resistance, BacterialGenetic LociGene Transfer, HorizontalPhylogenyProteomicsPseudomonas putidaStress, PhysiologicalToxin-Antitoxin SystemsAnti-Bacterial AgentsAntitoxinsBacterial ProteinsBacterial Toxins

Identifiers

PMID32513960
PMCPMC7280312
OpenAlexW3033592277

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.