Evidence map›Paper›PMID 32513731›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Molecular height measurement by cell surface optical profilometry (CSOP).

Sungmin Son, Sho C Takatori, Brian Belardi, Marija Podolski, Matthew H Bakalar, Daniel A Fletcher

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. SurFlex microscopy: Measuring flexibility of surface-tethered biomolecules.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Engineered molecular sensors for quantifying cell surface crowding.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
  13. Quantifying cytoskeletal organization from optical microscopy data.Frontiers in cell and developmental biology · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Glycocalyx Curving the Membrane: Forces Emerging from the Cell Exterior.Annual review of cell and developmental biology · 2021
    Review
  20. Cell-cell contact landscapes inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sungmin SonDepartment of Bioengineering and Biophysics Program, University of California, Berkeley, CA 94720.
Sho C TakatoriDepartment of Bioengineering and Biophysics Program, University of California, Berkeley, CA 94720.ORCID 0000-0002-7839-3399
Brian BelardiDepartment of Bioengineering and Biophysics Program, University of California, Berkeley, CA 94720.
Marija PodolskiDepartment of Bioengineering and Biophysics Program, University of California, Berkeley, CA 94720.
Matthew H BakalarDepartment of Bioengineering and Biophysics Program, University of California, Berkeley, CA 94720.
Daniel A FletcherDepartment of Bioengineering and Biophysics Program, University of California, Berkeley, CA 94720; fletch@berkeley.edu.ORCID 0000-0002-1890-5364
University of California, Berkeley · USLawrence Berkeley National Laboratory · US

Funding

Force-Mediated Membrane FusionR01GM114671 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI FLETCHER, DANIEL A · 2016 to 2019
$1.4M
Investigating Tight Junction-Mediated Spatial Organization in Polarized Epithelia.F32GM115091 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BELARDI, BRIAN · 2015 to 2017
$163k
NIGMS NIH HHS F32 GM115091NIGMS NIH HHS R01 GM114671
6 · The paper itself

Abstract

The physical dimensions of proteins and glycans on cell surfaces can critically affect cell function, for example, by preventing close contact between cells and limiting receptor accessibility. However, high-resolution measurements of molecular heights on native cell membranes have been difficult to obtain. Here we present a simple and rapid method that achieves nanometer height resolution by localizing fluorophores at the tip and base of cell surface molecules and determining their separation by radially averaging across many molecules. We use this method, which we call cell surface optical profilometry (CSOP), to quantify the height of key multidomain proteins on a model cell, as well as to capture average protein and glycan heights on native cell membranes. We show that average height of a protein is significantly smaller than its contour length, due to thermally driven bending and rotation on the membrane, and that height strongly depends on local surface and solution conditions. We find that average height increases with cell surface molecular crowding but decreases with solution crowding by solutes, both of which we confirm with molecular dynamics simulations. We also use experiments and simulations to determine the height of an epitope, based on the location of an antibody, which allows CSOP to profile various proteins and glycans on a native cell surface using antibodies and lectins. This versatile method for profiling cell surfaces has the potential to advance understanding of the molecular landscape of cells and the role of the molecular landscape in cell function.

Indexed as

AntibodiesCell LineCell MembraneEpitopesFluorescent Antibody TechniqueHEK293 CellsHumansLectinsLipid BilayersMembrane ProteinsModels, MolecularPolysaccharidesProtein DomainsAntibodiesEpitopesLectinsLipid BilayersMembrane ProteinsPolysaccharidesantibodiesCD45cell surface topographyplasma membranesuperresolution microscopy

Identifiers

PMID32513731
PMCPMC7322024
OpenAlexW3033825456

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.