Evidence map›Paper›PMID 32513117›Full record

ArticleBMC microbiology2020

Whole genome sequencing identifies an allele responsible for clear vs. turbid plaque morphology in a Mycobacteriophage.

Bhavani S Gudlavalleti, Trong Phung, Charles L Barton, Allysson Becker, Brittany L Graul, Jarod T Griffin, Connor J Hays, Bailey Horn, David R Liang, Lauren M Rutledge and 8 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Bhavani S GudlavalletiBiology Program, Centre College, Danville, KY, 40422, USA.
Trong PhungBiology Program, Centre College, Danville, KY, 40422, USA.
Charles L BartonBiology Program, Centre College, Danville, KY, 40422, USA.
Allysson BeckerBiology Program, Centre College, Danville, KY, 40422, USA.
Brittany L GraulBiology Program, Centre College, Danville, KY, 40422, USA.
Jarod T GriffinBiology Program, Centre College, Danville, KY, 40422, USA.
Connor J HaysBiology Program, Centre College, Danville, KY, 40422, USA.
Bailey HornBiology Program, Centre College, Danville, KY, 40422, USA.
David R LiangBiology Program, Centre College, Danville, KY, 40422, USA.
Lauren M RutledgeBiology Program, Centre College, Danville, KY, 40422, USA.
Alexandria M SzalanczyBiology Program, Centre College, Danville, KY, 40422, USA.
Bobby L GaffneyDepartment of Biology, Western Kentucky University, Bowling Green, KY, 42101, USA.
Rodney A KingDepartment of Biology, Western Kentucky University, Bowling Green, KY, 42101, USA.
Claire A RinehartDepartment of Biology, Western Kentucky University, Bowling Green, KY, 42101, USA.
Amanda K StaplesDepartment of Biology, Western Kentucky University, Bowling Green, KY, 42101, USA.
Alexander A StewartDepartment of Biology, Western Kentucky University, Bowling Green, KY, 42101, USA.
Marie L NydamBiology Program, Centre College, Danville, KY, 40422, USA. mnydam@soka.edu.
Kelly E O'QuinBiology Program, Centre College, Danville, KY, 40422, USA.
Centre College · USWestern Kentucky University · USSoka University of America · US

Funding

WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Foundation for the National Institutes of Health 2 P20 GM103436NIGMS NIH HHS P20 GM103436NIGMS NIH HHS P41 GM103311
6 · The paper itself

Abstract

backgroundWhole genome sequencing promises to revolutionize our ability to link genotypic and phenotypic variation in a wide range of model and non-model species.

resultsHere we describe the isolation and characterization of a novel mycobacteriophage named BGlluviae that grows on Mycobacterium smegmatis mc

conclusionsThis substitution is predicted to be located at the subunit interaction interface of the repressor protein, and thus prevents the establishment of lysogeny.

Indexed as

Amino Acid SubstitutionGenome, ViralHigh-Throughput Nucleotide SequencingLysogenyModels, MolecularMycobacteriophagesMycobacterium smegmatisPhenotypePhylogenyProtein ConformationViral ProteinsWhole Genome SequencingViral ProteinsImmunity repressor proteinMycobacteriophageMycobacterium smegmatis

Identifiers

PMID32513117
PMCPMC7282100
OpenAlexW3033753278

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.