Evidence map›Paper›PMID 32511780›Full record

ArticleJournal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research2020

Gene-Metabolite Network Linked to Inhibited Bioenergetics in Association With Spaceflight-Induced Loss of Male Mouse Quadriceps Muscle.

Nabarun Chakraborty, David L Waning, Aarti Gautam, Allison Hoke, Bintu Sowe, Dana Youssef, Stephan Butler, Michael Savaglio, Paul J Childress, Raina Kumar and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

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  13. Methodology, selection, and integration of fracture healing assessments in mice.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Nabarun ChakrabortyThe Geneva Foundation, Walter Reed Army Institute of Research, Silver Spring, MD, USA.ORCID 0000-0002-7883-2013
David L WaningPenn State College of Medicine, Hershey, PA, USA.ORCID 0000-0002-3858-7623
Aarti GautamMedical Readiness Systems Biology, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Allison HokeMedical Readiness Systems Biology, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Bintu SoweMedical Readiness Systems Biology, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Dana YoussefMedical Readiness Systems Biology, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Stephan ButlerThe Geneva Foundation, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Michael SavaglioDepartment of Orthopaedic Surgery, Indiana University School of Medicine, Indianapolis, IN, USA.
Paul J ChildressDepartment of Orthopaedic Surgery, Indiana University School of Medicine, Indianapolis, IN, USA.
Raina KumarMedical Readiness Systems Biology, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Candace MoylerMedical Readiness Systems Biology, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
George DimitrovThe Geneva Foundation, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
Melissa A KacenaDepartment of Orthopaedic Surgery, Indiana University School of Medicine, Indianapolis, IN, USA.ORCID 0000-0001-7293-0088
Rasha HammamiehMedical Readiness Systems Biology, Walter Reed Army Institute of Research, Silver Spring, MD, USA.ORCID 0000-0001-8643-6232
Oak Ridge Institute for Science and EducationThe Geneva Foundation · USWalter Reed Army Institute of Research · USIndiana University School of MedicinePenn State Milton S. Hershey Medical Center · USRichard L. Roudebush VA Medical Center · US

Funding

REGULATION OF HEMATOPOIETIC CELL PRODUCTIONT32DK007519 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI KAPLAN, MARK H · 1986 to 2020
$7.1M
Thrombopoietin: A novel regulator of bone healingR01AR060863 · NIAMS · INDIANA UNIVERSITY INDIANAPOLIS · PI KACENA, MELISSA A · 2012 to 2016
$1.7M
Impact of TPO Treatment on Bone Healing and Angiogenesis in Type 2 DiabetesI01BX003751 · VA · RLR VA MEDICAL CENTER · PI KACENA, MELISSA A · 2017 to 2021
–
BLRD VA I01 BX003751NIAMS NIH HHS R01 AR060863NIDDK NIH HHS T32 DK007519NIH HHS T32 DK007519RRD VA IK6 RX004809
6 · The paper itself

Abstract

Prolonged residence of mice in spaceflight is a scientifically robust and ethically ratified model of muscle atrophy caused by continued unloading. Under the Rodent Research Program of the National Aeronautics and Space Administration (NASA), we assayed the large-scale mRNA and metabolomic perturbations in the quadriceps of C57BL/6j male mice that lived in spaceflight (FLT) or on the ground (control or CTR) for approximately 4 weeks. The wet weights of the quadriceps were significantly reduced in FLT mice. Next-generation sequencing and untargeted mass spectroscopic assays interrogated the gene-metabolite landscape of the quadriceps. A majority of top-ranked differentially suppressed genes in FLT encoded proteins from the myosin or troponin families, suggesting sarcomere alterations in space. Significantly enriched gene-metabolite networks were found linked to sarcomeric integrity, immune fitness, and oxidative stress response; all inhibited in space as per in silico prediction. A significant loss of mitochondrial DNA copy numbers in FLT mice underlined the energy deprivation associated with spaceflight-induced stress. This hypothesis was reinforced by the transcriptomic sequencing-metabolomics integrative analysis that showed inhibited networks related to protein, lipid, and carbohydrate metabolism, and adenosine triphosphate (ATP) synthesis and hydrolysis. Finally, we discovered important upstream regulators, which could be targeted for next-generation therapeutic intervention for chronic disuse of the musculoskeletal system. © 2020 The Authors. Journal of Bone and Mineral Research published by American Society for Bone and Mineral Research.

Indexed as

Muscular AtrophySpace FlightWeightlessnessAnimalsMaleMetabolomeMiceMice, Inbred C57BLQuadriceps MuscleRNA, MessengerRNA, MessengerANIMAL MODELMETABOLISMSKELETAL MUSCLESYSTEMS BIOLOGYTISSUE SIGNALING

Identifiers

PMID32511780
PMCPMC7689867
OpenAlexW3032992356

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.