Evidence map›Paper›PMID 32510464›Full record

ArticleActa crystallographica. Section F, Structural biology communications2020

Crystal structures of the GH18 domain of the bifunctional peroxiredoxin-chitinase CotE from Clostridium difficile.

Jean L Whittingham, Shumpei Hanai, James A Brannigan, William T Ferreira, Eleanor J Dodson, Johan P Turkenburg, Jared Cartwright, Simon M Cutting, Anthony J Wilkinson

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.0field-weighted citation impact, top 61% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Emerging microbes & infections · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jean L WhittinghamStructural Biology Laboratory, York Biomedical Research Institute, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
Shumpei HanaiGraduate School of Pharmaceutical Sciences, Osaka University, Osaka, Japan.ORCID 0000-0003-2557-1152
James A BranniganStructural Biology Laboratory, York Biomedical Research Institute, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0001-6597-8972
William T FerreiraSchool of Biological Sciences, Royal Holloway University of London, Egham, Surrey, United Kingdom.
Eleanor J DodsonStructural Biology Laboratory, York Biomedical Research Institute, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
Johan P TurkenburgStructural Biology Laboratory, York Biomedical Research Institute, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0001-6992-6838
Jared CartwrightDepartment of Biology, University of York, York YO10 5DD, United Kingdom.
Simon M CuttingSchool of Biological Sciences, Royal Holloway University of London, Egham, Surrey, United Kingdom.
Anthony J WilkinsonStructural Biology Laboratory, York Biomedical Research Institute, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0003-4577-9479
University of York · GBRoyal Holloway University of London · GBOsaka University of Pharmaceutical Sciences · JP

Funding

Biotechnology and Biological Sciences Research Council BB/J007900/1
6 · The paper itself

Abstract

CotE is a coat protein that is present in the spores of Clostridium difficile, an obligate anaerobic bacterium and a pathogen that is a leading cause of antibiotic-associated diarrhoea in hospital patients. Spores serve as the agents of disease transmission, and CotE has been implicated in their attachment to the gut epithelium and subsequent colonization of the host. CotE consists of an N-terminal peroxiredoxin domain and a C-terminal chitinase domain. Here, a C-terminal fragment of CotE comprising residues 349-712 has been crystallized and its structure has been determined to reveal a core eight-stranded β-barrel fold with a neighbouring subdomain containing a five-stranded β-sheet. A prominent groove running across the top of the barrel is lined by residues that are conserved in family 18 glycosyl hydrolases and which participate in catalysis. Electron density identified in the groove defines the pentapeptide Gly-Pro-Ala-Met-Lys derived from the N-terminus of the protein following proteolytic cleavage to remove an affinity-purification tag. These observations suggest the possibility of designing peptidomimetics to block C. difficile transmission.

Indexed as

Amino Acid SequenceBacterial ProteinsChitinasesClostridioides difficileCrystallography, X-RayModels, MolecularPeroxiredoxinsPlant ProteinsProtein ConformationBacterial Proteinschitinase CChitinasesPeroxiredoxinsPlant Proteins3D domain swappingClostridium difficileCotEglycosyl hydrolasespores

Identifiers

PMID32510464
PMCPMC7278498
OpenAlexW3030281263

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.