Evidence map›Paper›PMID 32509396›Full record

ArticleAmerican journal of cancer research2020

Identification of a transcriptomic signature with excellent survival prediction for squamous cell carcinoma of the cervix.

John J Wallbillich, Paul Mh Tran, Shan Bai, Lynn Kh Tran, Ashok K Sharma, Sharad A Ghamande, Jin-Xiong She

Abstract read
In one paragraph

Article in American journal of cancer research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Frontiers in genetics · 2021
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

John J WallbillichCenter for Biotechnology and Genomic Medicine, Medical College of Georgia at Augusta University Augusta, GA, USA.
Paul Mh TranCenter for Biotechnology and Genomic Medicine, Medical College of Georgia at Augusta University Augusta, GA, USA.
Shan BaiCenter for Biotechnology and Genomic Medicine, Medical College of Georgia at Augusta University Augusta, GA, USA.
Lynn Kh TranCenter for Biotechnology and Genomic Medicine, Medical College of Georgia at Augusta University Augusta, GA, USA.
Ashok K SharmaCenter for Biotechnology and Genomic Medicine, Medical College of Georgia at Augusta University Augusta, GA, USA.
Sharad A GhamandeSection of Gynecologic Oncology, Department of Obstetrics and Gynecology, Medical College of Georgia at Augusta University Augusta, GA, USA.
Jin-Xiong SheCenter for Biotechnology and Genomic Medicine, Medical College of Georgia at Augusta University Augusta, GA, USA.

Funding

Deep Learning Based Genetic Risk Prediction for Type 1 DiabetesF30DK121461 · NIDDK · AUGUSTA UNIVERSITY · PI TRAN, PAUL · 2019 to 2021
$123k
NIDDK NIH HHS F30 DK121461
6 · The paper itself

Abstract

Survival for patients with newly diagnosed cervical cancer has not significantly improved over the past several decades. We sought to identify a clinically relevant set of prognostic genes for squamous cell carcinoma of the cervix (SCCC), the most common cervical cancer subtype. Using RNA-sequencing data and survival data from 203 patients in The Cancer Genome Atlas (TCGA), we conducted a series of analyses using different decile cutoffs for gene expression to identify genes that could indicate large and consistent survival differences across different decile cutoffs of gene expression. Those analyses identified 42 high-risk genes. A patient's survivability could be estimated by simply counting the number of high-risk genes with extremely high expression (above the 90

Indexed as

Cervical cancergene expressionprognostic biomarkerRNAsquamous cell carcinomaTCGAtranscriptomic risk

Identifiers

PMID32509396
PMCPMC7269782

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.