Evidence map›Paper›PMID 32507857›Full record

ArticleGenes and immunity2020

Association of variants in selected genes mediating host immune response with duration of Staphylococcus aureus bacteremia.

Tonia C Carter, Zhan Ye, Lynn C Ivacic, Noah Budi, Warren E Rose, Sanjay K Shukla

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. PeerJ · 2023
    Article
  2. The Role ofInternational journal of molecular sciences · 2022
    Review
  3. Genes · 2022
    Article
  4. Frontiers in cellular and infection microbiology · 2022
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Tonia C CarterCenter for Precision Medicine Research, Marshfield Clinic Research Institute, Marshfield, WI, USA.
Zhan YeCenter for Precision Medicine Research, Marshfield Clinic Research Institute, Marshfield, WI, USA.
Lynn C IvacicIntegrated Research and Development Laboratory, Marshfield Clinic Research Institute, Marshfield, WI, USA.
Noah BudiSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, USA.
Warren E RoseSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, USA.
Sanjay K ShuklaCenter for Precision Medicine Research, Marshfield Clinic Research Institute, Marshfield, WI, USA. shukla.sanjay@mcrf.mfldclin.edu.ORCID http://orcid.org/0000-0001-7267-8572
Marshfield Clinic · USMarshfield Clinic · USUniversity of Wisconsin–Madison · US

Funding

University of Wisconsin Institute for Clinical and Translational ResearchUL1TR002373 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI ELIZABETH S BURNSIDE, Allan R. Brasier · 2017 to 2026
$75.9M
Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
NCATS NIH HHS UL1 TR000427NCATS NIH HHS UL1 TR002373
6 · The paper itself

Abstract

Host genetic variation may be a contributing factor to variability in Staphylococcus aureus bacteremia duration. We assessed whether 28 single nucleotide polymorphisms (SNPs) in seven genes (TLR2, TLR4, TIRAP, IRAK4, TRAF6, NOD2, and CISH) that mediate host immune response were associated with S. aureus bacteremia duration. Subjects included 158 patients with short-term (≤4 days) and 44 with persistent (>4 days) S. aureus bacteremia from an academic medical center. In single SNP analyses, the minor allele frequencies of three TIRAP SNPs (rs655540, rs563011, and rs8177376) were higher in persistent bacteremia (P < 0.05). A haplotype with all three minor alleles was also associated with persistent bacteremia (P = 0.037). The minor allele frequencies of four other TIRAP SNPs (rs8177342, rs4937114, rs3802813, and rs4937115) were higher in short-term bacteremia (P < 0.05), and a haplotype containing the four minor alleles was associated with short-term bacteremia (P = 0.045). All seven SNPs are located in binding sites for proteins or noncoding RNAs that regulate transcription. None of the associations remained statistically significant after adjustment for multiple comparisons. Further investigation is needed to understand how genetic variation in TIRAP and other host immune genes may influence the duration of S. aureus bacteremia.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAllelesBacteremiaGenotyping TechniquesHost-Pathogen InteractionsHumansImmunityStaphylococcal InfectionsStaphylococcus aureus

Identifiers

PMID32507857
PMCPMC7449870
OpenAlexW3033589141

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.