Evidence map›Paper›PMID 32506268›Full record

ArticleGenes & genomics2020

A novel nonsense mutation in NPR2 gene causing Acromesomelic dysplasia, type Maroteaux in a consanguineous family in Southern Punjab (Pakistan).

Saima Mustafa, Zafrin Akhtar, Muhammad Latif, Mubashir Hassan, Muhammad Faisal, Furhan Iqbal

Open access · hybridAbstract read
In one paragraph

Article in Genes & genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  4. Novel Loss-of-Function Mutations inFrontiers in genetics · 2022
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  5. Article
  6. Open life sciences · 2021
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  7. Diagnostics (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Saima MustafaZoology Division, Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, 60800, Pakistan.
Zafrin AkhtarZoology Division, Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, 60800, Pakistan.
Muhammad LatifDepartment of Zoology, Division of Science and Technology, University of Education Lahore, Multan Campus, Multan, Pakistan.
Mubashir HassanInstitute of Molecular Biology and Biotechnology (IMBB), The University of Lahore, Lahore, Pakistan.
Muhammad FaisalFaculty of Health Studies, University of Bradford, Bradford, UK. M.Faisal1@bradford.ac.uk.
Furhan IqbalZoology Division, Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, 60800, Pakistan. furhan.iqbal@bzu.edu.pk.ORCID 0000-0003-4996-0152
Bahauddin Zakariya University · PKUniversity of Bradford · GBUniversity of Lahore · PKUniversity of Okara · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAcromesomelic dysplasia, type Maroteaux (AMDM) is a rare skeletal dysplasia following autosomal recessive mode of inheritance and characterized by abnormal growth plates, short and abnormal bones in the extremities and spine.

objectivePresent study was designed to report the molecular basis of AMDM in enrolled consanguineous family from Pakistan.

methodsA consanguineous family from Vehari District in Pakistan having multiple siblings suffering from AMDM was enrolled in present study. Whole exome sequencing (WES) approach was adopted to identify causative agent of AMDM. Human full length NPR2 gene and sequence with nonsense mutation was amplified by using Myc-tagged pXN vector and transformed in E. coli DH5α cells to confirm mutation. SDS-PAGE and Western blotting were done to confirm the production of truncated protein. Computational three dimensional structure generation through homology modeling approach was done to compare protein structure between patients and controls.

resultsWES reveled a nonsense mutation (c.613 C>T, p.R205X) in exon 1 of NPR2 gene leading to premature termination codon in mRNA of NPR2 gene resulting in a truncated protein with 204 amino acid residues that was confirmed by SDS-PAGE and Western blotting. Sanger sequencing confirmed that mutation in all subjects and mutation followed Mendalian pattern of inheritance. Multiple sequence alignment by ClustalW revealed that mutated domain of NPR2 is conserved region. Proetin structure comparison revealed a significant structural part of NPR2 was missing in truncated protein as compared to control.

conclusionWe are reporting that a novel nonsense mutation (c.613 C>T, p.R205X) in exon 1 of NPR2 gene is causing AMDM in a consanguineous Pakistani family.

Indexed as

Codon, NonsenseAtrial Natriuretic Factor Receptor BConsanguinityDwarfismEscherichia coliExome SequencingFemaleHEK293 CellsHumansMaleOsteochondrodysplasiasPakistanPedigreePhenotypePolymerase Chain ReactionReceptors, Atrial Natriuretic FactorAtrial Natriuretic Factor Receptor BCodon, NonsenseReceptors, Atrial Natriuretic Factor3D protein structureAMDMSanger sequencingWESWestern blot

Identifiers

PMID32506268
PMCPMC7374443
OpenAlexW3033888076

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.