Evidence map›Paper›PMID 32505207›Full record

ArticleMicrobial cell factories2020

Saccharomyces cerevisiae nutrient signaling pathways show an unexpected early activation pattern during winemaking.

Beatriz Vallejo, Emilia Matallana, Agustín Aranda

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Environmental Regulation and Gene-by-Environment Interaction InfluencebioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Increased Accumulation of Ginsenosides inPlants (Basel, Switzerland) · 2024
    Article
  6. Article
  7. Article
  8. Truth in wine yeast.Microbial biotechnology · 2022
    Review
  9. Article
  10. Next Generation Winemakers: Genetic Engineering inBioengineering (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Beatriz VallejoInstitute for Integrative Systems Biology, I2SysBio, University of Valencia-CSIC, Parc Cientific UV. Av. Agustín Escardino 9, Paterna, 46980, Valencia, Spain.
Emilia MatallanaInstitute for Integrative Systems Biology, I2SysBio, University of Valencia-CSIC, Parc Cientific UV. Av. Agustín Escardino 9, Paterna, 46980, Valencia, Spain.
Agustín ArandaInstitute for Integrative Systems Biology, I2SysBio, University of Valencia-CSIC, Parc Cientific UV. Av. Agustín Escardino 9, Paterna, 46980, Valencia, Spain. agustin.aranda@csic.es.ORCID http://orcid.org/0000-0003-3320-7326
Universitat de València · ES

Funding

Ministerio de Ciencia, Innovación y Universidades AGL2017-83254-R
6 · The paper itself

Abstract

backgroundSaccharomyces cerevisiae wine strains can develop stuck or sluggish fermentations when nutrients are scarce or suboptimal. Nutrient sensing and signaling pathways, such as PKA, TORC1 and Snf1, work coordinately to adapt growth and metabolism to the amount and balance of the different nutrients in the medium. This has been exhaustively studied in laboratory strains of S. cerevisiae and laboratory media, but much less under industrial conditions.

resultsInhibitors of such pathways, like rapamycin or 2-deoxyglucose, failed to discriminate between commercial wine yeast strains with different nutritional requirements, but evidenced genetic variability among industrial isolates, and between laboratory and commercial strains. Most signaling pathways involve events of protein phosphorylation that can be followed as markers of their activity. The main pathway to promote growth in the presence of nitrogen, the TORC1 pathway, measured by the phosphorylation of Rps6 and Par32, proved active at the very start of fermentation, mainly on day 1, and ceased soon afterward, even before cellular growth stopped. Transcription factor Gln3, which activates genes subject to nitrogen catabolite repression, was also active for the first hours, even when ammonium and amino acids were still present in media. Snf1 kinase was activated only when glucose was exhausted under laboratory conditions, but was active from early fermentation stages. The same results were generally obtained when nitrogen was limiting, which indicates a unique pathway activation pattern in winemaking. As PKA remained active throughout fermentation, it could be the central pathway that controls others, provided sugars are present.

conclusionsWine fermentation is a distinct environmental situation from growth in laboratory media in molecular terms. The mechanisms involved in glucose and nitrogen repression respond differently under winemaking conditions.

Indexed as

FermentationCulture MediaSaccharomyces cerevisiaeSignal TransductionVitisWineCulture MediaNitrogen Catabolite RepressionNutrient signaling pathwaysSaccharomyces cerevisiaeSnf1TORC1Wine

Identifiers

PMID32505207
PMCPMC7275465
OpenAlexW3033538859

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.